RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 SP8Q8IXZ3 490 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 NLRP7Q8WX94 980 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 FAM149B1Q96BN6 582 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 RAB17Q9H0T7 212 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 MYL1P05976 194 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 KIF11P52732 1056 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.26■□□□□ 0.83
PCDH1-201ENST00000287008 TFAMQ00059 246 aaKnown RBP20.26■□□□□ 0.83
PCDH1-201ENST00000287008 SETD1BQ9UPS6 1966 aaKnown RBP20.26■□□□□ 0.83
PCDH1-201ENST00000287008 PSDA5PKW4 1024 aaPredicted RBP20.26■□□□□ 0.83
PCDH1-201ENST00000287008 GOLGA6CA6NDK9 693 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 GOLGA6BA6NDN3 693 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 GOLGA6DP0CG33 693 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 SPP2Q13103 211 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 SEPT2Q15019 361 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 METTL23Q86XA0 190 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 PARVGQ9HBI0 331 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 PFDN4Q9NQP4 134 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 GOLGA6AQ9NYA3 693 aa20.26■□□□□ 0.83
PCDH1-201ENST00000287008 CYP2D6P10635 497 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 PTPREP23469 700 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 CDC25AP30304 524 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 AP3B2Q13367 1082 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 SRGAP1Q7Z6B7 1085 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 STAG1Q8WVM7 1258 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 USP17L10C9JJH3 530 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 COPB1P53618 953 aaKnown RBP20.25■□□□□ 0.83
PCDH1-201ENST00000287008 CACNB1Q02641 598 aaPredicted RBP20.25■□□□□ 0.83
PCDH1-201ENST00000287008 RPGRIP1Q96KN7 1286 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 HAUS4Q9H6D7 363 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 KRT15P19012 456 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 AFAP1L2Q8N4X5 818 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 LINC00301Q8NCQ3 95 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 CCDC110Q8TBZ0 833 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 P2RX5Q93086 422 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 TIGD1Q96MW7 591 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 AFG3L2Q9Y4W6 797 aa20.25■□□□□ 0.83
PCDH1-201ENST00000287008 IQCA1LA6NCM1 817 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 KCNK3O14649 394 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 LRRC41Q15345 812 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 TMEM47Q9BQJ4 181 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 DCP1AQ9NPI6 582 aaPredicted RBP20.24■□□□□ 0.83
PCDH1-201ENST00000287008 PCDHB4Q9Y5E5 795 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 UTYO14607 1347 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 MYO1FO00160 1098 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 INTS8Q75QN2 995 aaKnown RBP20.24■□□□□ 0.83
PCDH1-201ENST00000287008 CTAGE3PQ8IX95 158 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 RMDN3Q96TC7 470 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 RCOR1Q9UKL0 485 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 BZW2Q9Y6E2 419 aaKnown RBP20.24■□□□□ 0.83
PCDH1-201ENST00000287008 C1orf167Q5SNV9 1468 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 FAM196BA6NMK8 535 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 EEF1GP26641 437 aaKnown RBP20.24■□□□□ 0.83
PCDH1-201ENST00000287008 MAP7D3Q8IWC1 876 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 MROH7-TTC4A0A0A0MT08 1334 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 ALKQ9UM73 1620 aa20.24■□□□□ 0.83
PCDH1-201ENST00000287008 PPP2R5CQ13362 524 aa20.23■□□□□ 0.83
PCDH1-201ENST00000287008 CUL4AQ13619 759 aa20.23■□□□□ 0.83
PCDH1-201ENST00000287008 FAM83BQ5T0W9 1011 aa20.23■□□□□ 0.83
PCDH1-201ENST00000287008 SNX25Q9H3E2 840 aa20.23■□□□□ 0.83
PCDH1-201ENST00000287008 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.23■□□□□ 0.83
PCDH1-201ENST00000287008 NBPF26B4DH59 902 aa20.23■□□□□ 0.83
PCDH1-201ENST00000287008 NBPF10Q6P3W6 841 aaKnown RBP20.23■□□□□ 0.83
PCDH1-201ENST00000287008 TMTC3Q6ZXV5 915 aa20.23■□□□□ 0.83
PCDH1-201ENST00000287008 NBPF15Q8N660 670 aa20.23■□□□□ 0.83
PCDH1-201ENST00000287008 FAM81BQ96LP2 452 aa20.23■□□□□ 0.83
PCDH1-201ENST00000287008 VPS37BQ9H9H4 285 aa20.23■□□□□ 0.83
PCDH1-201ENST00000287008 CPDO75976 1380 aa20.23■□□□□ 0.83
PCDH1-201ENST00000287008 ZBTB5O15062 677 aa20.23■□□□□ 0.83
PCDH1-201ENST00000287008 NFX1Q12986 1120 aaKnown RBP20.23■□□□□ 0.83
PCDH1-201ENST00000287008 K7ERI5 159 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 VPS52Q8N1B4 723 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 ZFP91Q96JP5 570 aaPredicted RBP20.22■□□□□ 0.83
PCDH1-201ENST00000287008 TULP4Q9NRJ4 1543 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 PLEKHA8P1O95397 391 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 STXBP2Q15833 593 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 MRFAP1L1Q96HT8 127 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 HYOU1Q9Y4L1 999 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 PLA2G4BP0C869 781 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 FYB2Q5VWT5 728 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 ARL6IP4Q66PJ3 421 aaKnown RBP20.22■□□□□ 0.83
PCDH1-201ENST00000287008 ATP2A3Q93084 1043 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 AIFM3Q96NN9 605 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 DESI2Q9BSY9 194 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 FAM49AQ9H0Q0 323 aaPredicted RBP20.22■□□□□ 0.83
PCDH1-201ENST00000287008 SNAP25P60880 206 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 HHATQ5VTY9 493 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 SLC44A5Q8NCS7 719 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 EMILIN3Q9NT22 766 aa20.22■□□□□ 0.83
PCDH1-201ENST00000287008 SYNJ2BP-COX16A0A087WUM0 186 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 TBC1D8O95759 1140 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 AFPP02771 609 aaKnown RBP20.21■□□□□ 0.83
PCDH1-201ENST00000287008 TCP1P17987 556 aaKnown RBP20.21■□□□□ 0.83
PCDH1-201ENST00000287008 MAN1A1P33908 653 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 GPSM2P81274 684 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 MTMR3Q13615 1198 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 COX16Q9P0S2 106 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 EPN1Q9Y6I3 576 aaPredicted RBP20.21■□□□□ 0.83
PCDH1-201ENST00000287008 TYW5A2RUC4 315 aaKnown RBP20.21■□□□□ 0.83
PCDH1-201ENST00000287008 CLIC2O15247 247 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms