RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 SFPQP23246 707 aaKnown RBP eCLIP17.14■□□□□ 0.33
SF3B4-201ENST00000271628 HOXA13P31271 388 aaPredicted RBP17.14■□□□□ 0.33
SF3B4-201ENST00000271628 USP14P54578 494 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 ASIC1P78348 528 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 CCZ1BP86790 482 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 CCZ1P86791 482 aaPredicted RBP17.14■□□□□ 0.33
SF3B4-201ENST00000271628 TMEM119Q4V9L6 283 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 PRR16Q569H4 304 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 HSP90AA4PQ58FG1 418 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 NBPF12Q5TAG4 269 aaPredicted RBP17.14■□□□□ 0.33
SF3B4-201ENST00000271628 CEP135Q66GS9 1140 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 PDCL2Q8N4E4 241 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 CCDC112Q8NEF3 446 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 NELFBQ8WX92 580 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 RAD54LQ92698 747 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 EXOC1Q9NV70 894 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 GDAQ9Y2T3 454 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 PPP2R3BQ9Y5P8 575 aa17.14■□□□□ 0.33
SF3B4-201ENST00000271628 ASTN2O75129 1339 aaPredicted RBP17.14■□□□□ 0.33
SF3B4-201ENST00000271628 DICER1Q9UPY3 1922 aaKnown RBP17.13■□□□□ 0.33
SF3B4-201ENST00000271628 ZNF76P36508 570 aa17.13■□□□□ 0.33
SF3B4-201ENST00000271628 PDE4DQ08499 809 aa17.13■□□□□ 0.33
SF3B4-201ENST00000271628 FILIP1LQ4L180 1135 aa17.13■□□□□ 0.33
SF3B4-201ENST00000271628 ANGEL2Q5VTE6 544 aaKnown RBP17.13■□□□□ 0.33
SF3B4-201ENST00000271628 HAUS3Q68CZ6 603 aa17.13■□□□□ 0.33
SF3B4-201ENST00000271628 CNNM4Q6P4Q7 775 aa17.13■□□□□ 0.33
SF3B4-201ENST00000271628 CCDC84Q86UT8 332 aaPredicted RBP17.13■□□□□ 0.33
SF3B4-201ENST00000271628 LDHDQ86WU2 507 aa17.13■□□□□ 0.33
SF3B4-201ENST00000271628 ANKRD20A12PQ8NF67 263 aa17.13■□□□□ 0.33
SF3B4-201ENST00000271628 ETNPPLQ8TBG4 499 aa17.13■□□□□ 0.33
SF3B4-201ENST00000271628 ZNF112Q9UJU3 913 aa17.13■□□□□ 0.33
SF3B4-201ENST00000271628 A0A1B0GTH6 734 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 ICAM1P05362 532 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 NR1I3Q14994 352 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 PTPN14Q15678 1187 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 COBLL1Q53SF7 1204 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 NYAP1Q6ZVC0 841 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 DHTKD1Q96HY7 919 aaPredicted RBP17.12■□□□□ 0.33
SF3B4-201ENST00000271628 SLF1Q9BQI6 1058 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 ZMYND15Q9H091 742 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 AS3MTQ9HBK9 375 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 FBXO28Q9NVF7 368 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 PNMA2Q9UL42 364 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 KIF2AO00139 706 aaPredicted RBP17.12■□□□□ 0.33
SF3B4-201ENST00000271628 CCT6AP40227 531 aaKnown RBP17.12■□□□□ 0.33
SF3B4-201ENST00000271628 MCM6Q14566 821 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 ARID5BQ14865 1188 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 FCHSD1Q86WN1 690 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 ERMNQ8TAM6 284 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 NUDT12Q9BQG2 462 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 RABGAP1Q9Y3P9 1069 aa17.12■□□□□ 0.33
SF3B4-201ENST00000271628 LRRC10BA6NIK2 292 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 FAM86B1E9PN63 330 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 FAM86B2P0C5J1 330 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 FDX1P10109 184 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 INPP5BP32019 993 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 SPECC1LQ69YQ0 1117 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 UNC13DQ70J99 1090 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 SMAP1Q8IYB5 467 aaPredicted RBP17.11■□□□□ 0.33
SF3B4-201ENST00000271628 SCYL3Q8IZE3 742 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 LENG9Q96B70 501 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 WDR18Q9BV38 432 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 BMP2KQ9NSY1 1161 aaPredicted RBP17.11■□□□□ 0.33
SF3B4-201ENST00000271628 KCNJ6P48051 423 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 KCTD17Q8N5Z5 321 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 SAMD3Q8N6K7 520 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 INTS13Q9NVM9 706 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 MAPK8IP1Q9UQF2 711 aa17.11■□□□□ 0.33
SF3B4-201ENST00000271628 BICDL2A1A5D9 508 aa17.1■□□□□ 0.33
SF3B4-201ENST00000271628 MYMKA6NI61 221 aa17.1■□□□□ 0.33
SF3B4-201ENST00000271628 PSMD2Q13200 908 aa17.1■□□□□ 0.33
SF3B4-201ENST00000271628 ARMCX5Q6P1M9 558 aa17.1■□□□□ 0.33
SF3B4-201ENST00000271628 SAMD1Q6SPF0 538 aaPredicted RBP17.1■□□□□ 0.33
SF3B4-201ENST00000271628 MCF2L2Q86YR7 1114 aa17.1■□□□□ 0.33
SF3B4-201ENST00000271628 CCAR2Q8N163 923 aaKnown RBP17.1■□□□□ 0.33
SF3B4-201ENST00000271628 NOC3LQ8WTT2 800 aaKnown RBP17.1■□□□□ 0.33
SF3B4-201ENST00000271628 GJA10Q969M2 543 aa17.1■□□□□ 0.33
SF3B4-201ENST00000271628 PICK1Q9NRD5 415 aa17.1■□□□□ 0.33
SF3B4-201ENST00000271628 MAP3K20Q9NYL2 800 aaKnown RBP17.1■□□□□ 0.33
SF3B4-201ENST00000271628 ADD3Q9UEY8 706 aaKnown RBP17.1■□□□□ 0.33
SF3B4-201ENST00000271628 CCPG1Q9ULG6 757 aa17.1■□□□□ 0.33
SF3B4-201ENST00000271628 SMCHD1A6NHR9 2005 aa17.1■□□□□ 0.33
SF3B4-201ENST00000271628 DOCK1Q14185 1865 aa17.1■□□□□ 0.33
SF3B4-201ENST00000271628 MSH4O15457 936 aa17.09■□□□□ 0.33
SF3B4-201ENST00000271628 TAL1P17542 331 aaPredicted RBP17.09■□□□□ 0.33
SF3B4-201ENST00000271628 APTXQ7Z2E3 356 aaKnown RBP17.09■□□□□ 0.33
SF3B4-201ENST00000271628 TBC1D5Q92609 795 aa17.09■□□□□ 0.33
SF3B4-201ENST00000271628 LIMA1Q9UHB6 759 aaKnown RBP17.09■□□□□ 0.33
SF3B4-201ENST00000271628 UTRNP46939 3433 aa17.09■□□□□ 0.33
SF3B4-201ENST00000271628 SPIRE1Q08AE8 756 aa17.09■□□□□ 0.33
SF3B4-201ENST00000271628 NCBP1Q09161 790 aaKnown RBP17.09■□□□□ 0.33
SF3B4-201ENST00000271628 MTMR2Q13614 643 aa17.09■□□□□ 0.33
SF3B4-201ENST00000271628 SUPT20HL1Q3ZLR7 823 aa17.09■□□□□ 0.33
SF3B4-201ENST00000271628 TRPM4Q8TD43 1214 aa17.09■□□□□ 0.33
SF3B4-201ENST00000271628 DDX12PQ92771 950 aa17.09■□□□□ 0.33
SF3B4-201ENST00000271628 WRNIP1Q96S55 665 aa17.09■□□□□ 0.33
SF3B4-201ENST00000271628 TANGO6Q9C0B7 1094 aa17.09■□□□□ 0.33
SF3B4-201ENST00000271628 SLC38A10Q9HBR0 1119 aa17.09■□□□□ 0.33
SF3B4-201ENST00000271628 KIAA1024Q9UPX6 916 aa17.09■□□□□ 0.33
SF3B4-201ENST00000271628 TUBB4AP04350 444 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms