RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 RYBPQ8N488 228 aaPredicted RBP8.57□□□□□ -1.04
USP3-201ENST00000268049 OTUD7AQ8TE49 926 aaPredicted RBP8.57□□□□□ -1.04
USP3-201ENST00000268049 NT5C3AQ9H0P0 336 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 SYNDIG1Q9H7V2 258 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 ACAD9Q9H845 621 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 TMEM39AQ9NV64 488 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 BAIAP2L1Q9UHR4 511 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 CPSF3Q9UKF6 684 aaKnown RBP8.57□□□□□ -1.04
USP3-201ENST00000268049 TPX2Q9ULW0 747 aaKnown RBP8.57□□□□□ -1.04
USP3-201ENST00000268049 DOLKQ9UPQ8 538 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 ATP6V0A2Q9Y487 856 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 PXDNQ92626 1479 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 SPDYE16A6NNV3 312 aaPredicted RBP8.57□□□□□ -1.04
USP3-201ENST00000268049 C6orf222P0C671 652 aaPredicted RBP8.57□□□□□ -1.04
USP3-201ENST00000268049 TNNC1P63316 161 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 SPDYE2Q495Y8 402 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 DDX50Q9BQ39 737 aaKnown RBP8.57□□□□□ -1.04
USP3-201ENST00000268049 PSTPIP2Q9H939 334 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 CD209Q9NNX6 404 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 TOPORSQ9NS56 1045 aaPredicted RBP8.57□□□□□ -1.04
USP3-201ENST00000268049 SKIP12755 728 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 VAV2P52735 878 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 SF3B3Q15393 1217 aaKnown RBP8.57□□□□□ -1.04
USP3-201ENST00000268049 SURF1Q15526 300 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 NBPF9Q3BBW0 867 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 SYDE2Q5VT97 1194 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 RNF207Q6ZRF8 634 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 INTS8Q75QN2 995 aaKnown RBP8.57□□□□□ -1.04
USP3-201ENST00000268049 TADA2BQ86TJ2 420 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 GPC2Q8N158 579 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 DONSONQ9NYP3 566 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 TXNDC16Q9P2K2 825 aa8.57□□□□□ -1.04
USP3-201ENST00000268049 LUC7L3O95232 432 aaKnown RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 KRT5P13647 590 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 TTC1Q99614 292 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 AKAP7Q9P0M2 348 aaPredicted RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 BCL9O00512 1426 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 ATP2A1O14983 1001 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 CETN3O15182 167 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 SPAG1Q07617 926 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 FSTL1Q12841 308 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 SEPT8Q92599 483 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 TBC1D31Q96DN5 1066 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 ZKSCAN3Q9BRR0 538 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 LARP6Q9BRS8 491 aaKnown RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 SEPT9Q9UHD8 586 aaPredicted RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 ANAPC4Q9UJX5 808 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 SLC4A7Q9Y6M7 1214 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 GDF11O95390 407 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 DEXIO95424 95 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 AMHP03971 560 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 BPIFB4P59827 614 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 EIF2B5Q13144 721 aaKnown RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 POLA2Q14181 598 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 KRT33BQ14525 404 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 KIAA0753Q2KHM9 967 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 PREPLQ4J6C6 727 aaPredicted RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 CREB3L3Q68CJ9 461 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 THNSL1Q8IYQ7 743 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 CCDC89Q8N998 374 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 ANKRD36BP1Q96IX9 119 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 CABS1Q96KC9 395 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 EDEM3Q9BZQ6 932 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 GUCY1B3Q02153 619 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 TNFAIP2Q03169 654 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 PRPF4BQ13523 1007 aaKnown RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 Q6ZUG5 572 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 PLEKHH3Q7Z736 793 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 REXO1Q8N1G1 1221 aaKnown RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 PPP1R14CQ8TAE6 165 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 CCT6BQ92526 530 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 TCEANC2Q96MN5 208 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 RRP15Q9Y3B9 282 aaKnown RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 MED1Q15648 1581 aaPredicted RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 CAMTA1Q9Y6Y1 1673 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 FRMD3A2A2Y4 597 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 B4E1Z4 1266 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 SMIM24O75264 130 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 CYBBP04839 570 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 CD19P15391 556 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 IER5Q5VY09 327 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 ICE2Q659A1 982 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 RGMBQ6NW40 437 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 ERO1BQ86YB8 467 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 EDC3Q96F86 508 aaKnown RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 MMS19Q96T76 1030 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 WDR11Q9BZH6 1224 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 STARD7Q9NQZ5 370 aa8.56□□□□□ -1.04
USP3-201ENST00000268049 TFIP11Q9UBB9 837 aaKnown RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 DBNLQ9UJU6 430 aaKnown RBP8.56□□□□□ -1.04
USP3-201ENST00000268049 ADCY9O60503 1353 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 ROBO1Q9Y6N7 1651 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 LRRIQ4A6NIV6 560 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 PI4K2BG5E9Z4 385 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 CIB2O75838 187 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 LIG3P49916 1009 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 IFRD2Q12894 506 aaPredicted RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 MYO1EQ12965 1108 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms