RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 SHPRHQ149N8 1683 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 ARHGEF35A5YM69 484 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 LAD1O00515 517 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 STAT1P42224 750 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 SCNN1DP51172 638 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 PLTPP55058 493 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 FMR1Q06787 632 aaKnown RBP eCLIP12.65□□□□□ -0.38
VPS33A-201ENST00000267199 MUM1Q2TAK8 710 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 APBB1IPQ7Z5R6 666 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-201ENST00000267199 TBC1D1Q86TI0 1168 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-201ENST00000267199 CNKSR2Q8WXI2 1034 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 AK8Q96MA6 479 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 KIF20BQ96Q89 1820 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 AP1M1Q9BXS5 423 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 DDX25Q9UHL0 483 aaKnown RBP12.65□□□□□ -0.38
VPS33A-201ENST00000267199 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-201ENST00000267199 STAMBPO95630 424 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 ATP1A1P05023 1023 aaKnown RBP12.65□□□□□ -0.38
VPS33A-201ENST00000267199 CYP19A1P11511 503 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-201ENST00000267199 AP1ARQ63HQ0 302 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 PIGSQ96S52 555 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 BRIP1Q9BX63 1249 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 MLXIPQ9HAP2 919 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 MAGEF1Q9HAY2 307 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 DISC1Q9NRI5 854 aa12.65□□□□□ -0.38
VPS33A-201ENST00000267199 KDM3AQ9Y4C1 1321 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 DDX39AO00148 427 aaKnown RBP12.64□□□□□ -0.39
VPS33A-201ENST00000267199 CHUKO15111 745 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 H2AFXP16104 143 aaPredicted RBP12.64□□□□□ -0.39
VPS33A-201ENST00000267199 PDE6BP35913 854 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 ADAM9Q13443 819 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 FYB2Q5VWT5 728 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 MB21D1Q8N884 522 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 COG1Q8WTW3 980 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 KLHL29Q96CT2 875 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 TPX2Q9ULW0 747 aaKnown RBP12.64□□□□□ -0.39
VPS33A-201ENST00000267199 USTQ9Y2C2 406 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 PCDHA13Q9Y5I0 950 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 TTC26A0AVF1 554 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 ECM2O94769 699 aaPredicted RBP12.64□□□□□ -0.39
VPS33A-201ENST00000267199 GNA14O95837 355 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 USP14P54578 494 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 ARL6IP4Q66PJ3 421 aaKnown RBP12.64□□□□□ -0.39
VPS33A-201ENST00000267199 EMBQ6PCB8 327 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 TPH2Q8IWU9 490 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 RETREG2Q8NC44 543 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 NOA1Q8NC60 698 aaKnown RBP12.64□□□□□ -0.39
VPS33A-201ENST00000267199 IGDCC4Q8TDY8 1250 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 CPVLQ9H3G5 476 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 L2HGDHQ9H9P8 463 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 CCDC169A6NNP5 214 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 ALS2CLQ60I27 953 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 USP49Q70CQ1 688 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 SH2D3CQ8N5H7 860 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 COA7Q96BR5 231 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.64□□□□□ -0.39
VPS33A-201ENST00000267199 KIAA1024Q9UPX6 916 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 DIP2AQ14689 1571 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 FAM205CA6NFA0 338 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 EIF4E1BA6NMX2 242 aaKnown RBP12.64□□□□□ -0.39
VPS33A-201ENST00000267199 TXNDC9O14530 226 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 BACH1O14867 736 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 NCK2O43639 380 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 CACNB1Q02641 598 aaPredicted RBP12.64□□□□□ -0.39
VPS33A-201ENST00000267199 CYP4A11Q02928 519 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 NFRKBQ6P4R8 1299 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 RAD9BQ6WBX8 426 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 CHP1Q99653 195 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 TRIM10Q9UDY6 481 aa12.64□□□□□ -0.39
VPS33A-201ENST00000267199 CPDO75976 1380 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 AGLP35573 1532 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 CROCCP2Q86T23 111 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 MMS19Q96T76 1030 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 VCXQ9H320 206 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 BSDC1Q9NW68 430 aaPredicted RBP12.63□□□□□ -0.39
VPS33A-201ENST00000267199 ADAMTS1Q9UHI8 967 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 RBM26Q5T8P6 1007 aaKnown RBP12.63□□□□□ -0.39
VPS33A-201ENST00000267199 DPH6Q7L8W6 267 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 TC2NQ8N9U0 490 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 FBXO2Q9UK22 296 aaPredicted RBP12.63□□□□□ -0.39
VPS33A-201ENST00000267199 PTPN22Q9Y2R2 807 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 ITSN1Q15811 1721 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 ZNF185O15231 689 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 MAN2A1Q16706 1144 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 FAM133AQ8N9E0 248 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 TMEM51Q9NW97 253 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 PLAAQ9Y263 795 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 PCDHA1Q9Y5I3 950 aa12.63□□□□□ -0.39
VPS33A-201ENST00000267199 ATP2B4P23634 1241 aa12.62□□□□□ -0.39
VPS33A-201ENST00000267199 PRCPP42785 496 aa12.62□□□□□ -0.39
VPS33A-201ENST00000267199 GUCY1A3Q02108 690 aa12.62□□□□□ -0.39
VPS33A-201ENST00000267199 KRT26Q7Z3Y9 468 aa12.62□□□□□ -0.39
VPS33A-201ENST00000267199 DGKHQ86XP1 1220 aa12.62□□□□□ -0.39
VPS33A-201ENST00000267199 SPATS2LQ9NUQ6 558 aaKnown RBP12.62□□□□□ -0.39
VPS33A-201ENST00000267199 SRP68Q9UHB9 627 aaKnown RBP12.62□□□□□ -0.39
VPS33A-201ENST00000267199 TUBE1Q9UJT0 475 aa12.62□□□□□ -0.39
VPS33A-201ENST00000267199 HPS5Q9UPZ3 1129 aa12.62□□□□□ -0.39
VPS33A-201ENST00000267199 MROH7-TTC4A0A0A0MT08 1334 aa12.62□□□□□ -0.39
VPS33A-201ENST00000267199 FXR1P51114 621 aaKnown RBP eCLIP12.62□□□□□ -0.39
VPS33A-201ENST00000267199 FKBP3Q00688 224 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms