RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 ZBED6P86452 979 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 ROR2Q01974 943 aaKnown RBP9.67□□□□□ -0.86
VAPB-201ENST00000265619 TTF1Q15361 905 aaPredicted RBP9.67□□□□□ -0.86
VAPB-201ENST00000265619 MFN1Q8IWA4 741 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 SLC17A8Q8NDX2 589 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 NEUROG2Q9H2A3 272 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 GDF3Q9NR23 364 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 RGL1Q9NZL6 768 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 NKX1-2Q9UD57 310 aaPredicted RBP9.67□□□□□ -0.86
VAPB-201ENST00000265619 BCL9O00512 1426 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 A6NNZ2 444 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 PES1O00541 588 aaKnown RBP9.67□□□□□ -0.86
VAPB-201ENST00000265619 KRT16P08779 473 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 NR5A1Q13285 461 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 ADAM9Q13443 819 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 TUBB8Q3ZCM7 444 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 FOXB2Q5VYV0 432 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 CRELD2Q6UXH1 353 aaPredicted RBP9.67□□□□□ -0.86
VAPB-201ENST00000265619 CNBD1Q8NA66 436 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 LINC00116Q8NCU8 138 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 KDM4CQ9H3R0 1056 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 NHEJ1Q9H9Q4 299 aaPredicted RBP9.67□□□□□ -0.86
VAPB-201ENST00000265619 LIMA1Q9UHB6 759 aaKnown RBP9.67□□□□□ -0.86
VAPB-201ENST00000265619 DACH1Q9UI36 760 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 PCDHGA4Q9Y5G9 962 aa9.67□□□□□ -0.86
VAPB-201ENST00000265619 RNASELQ05823 741 aaKnown RBP9.66□□□□□ -0.86
VAPB-201ENST00000265619 ZNF844Q08AG5 666 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 TCP11X2Q5H9J9 407 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 MTHFD1LQ6UB35 978 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 CD302Q8IX05 232 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 TEKT4Q8WW24 435 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 PAGE5Q96GU1 130 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 GJD4Q96KN9 370 aaPredicted RBP9.66□□□□□ -0.86
VAPB-201ENST00000265619 GORASP1Q9BQQ3 440 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 CHCHD3Q9NX63 227 aaKnown RBP9.66□□□□□ -0.86
VAPB-201ENST00000265619 NOVA2Q9UNW9 492 aaKnown RBP9.66□□□□□ -0.86
VAPB-201ENST00000265619 MYH7BA7E2Y1 1941 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 MYH6P13533 1939 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 KCNJ18B7U540 433 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 PPFIA2O75334 1257 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 IDH1O75874 414 aaKnown RBP9.66□□□□□ -0.86
VAPB-201ENST00000265619 PTPREP23469 700 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 POLD1P28340 1107 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 HSD17B3P37058 310 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 PMS1P54277 932 aaKnown RBP9.66□□□□□ -0.86
VAPB-201ENST00000265619 PAK2Q13177 524 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 KCNJ12Q14500 433 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 TMC4Q7Z404 712 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 ARHGAP22Q7Z5H3 698 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 CPLX4Q7Z7G2 160 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 MB21D2Q8IYB1 491 aaPredicted RBP9.66□□□□□ -0.86
VAPB-201ENST00000265619 RBM41Q96IZ5 413 aaKnown RBP9.66□□□□□ -0.86
VAPB-201ENST00000265619 ALS2CR12Q96Q35 445 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 DNAJC7Q99615 494 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 CDCA7Q9BWT1 371 aaPredicted RBP9.66□□□□□ -0.86
VAPB-201ENST00000265619 TAF1DQ9H5J8 278 aaPredicted RBP9.66□□□□□ -0.86
VAPB-201ENST00000265619 INCENPQ9NQS7 918 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 UBN2Q6ZU65 1347 aa9.66□□□□□ -0.86
VAPB-201ENST00000265619 PARP4Q9UKK3 1724 aaKnown RBP9.66□□□□□ -0.86
VAPB-201ENST00000265619 HMGB1P1B2RPK0 211 aaPredicted RBP9.65□□□□□ -0.86
VAPB-201ENST00000265619 EYA2O00167 538 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 KRT86O43790 486 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 ECHS1P30084 290 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 GCLCP48506 637 aaPredicted RBP9.65□□□□□ -0.86
VAPB-201ENST00000265619 MKRN4PQ13434 485 aaPredicted RBP9.65□□□□□ -0.86
VAPB-201ENST00000265619 CMTR1Q8N1G2 835 aaKnown RBP9.65□□□□□ -0.86
VAPB-201ENST00000265619 ATL2Q8NHH9 583 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 TSPYL2Q9H2G4 693 aaPredicted RBP9.65□□□□□ -0.86
VAPB-201ENST00000265619 STK38LQ9Y2H1 464 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 ABCA3Q99758 1704 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 HGSO14964 777 aaPredicted RBP9.65□□□□□ -0.86
VAPB-201ENST00000265619 ALADP13716 330 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 FERP16591 822 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 VAV2P52735 878 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 PDIA5Q14554 519 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 ZNF268Q14587 947 aaPredicted RBP9.65□□□□□ -0.86
VAPB-201ENST00000265619 MIGA2Q7L4E1 593 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 ZNF572Q7Z3I7 529 aaPredicted RBP9.65□□□□□ -0.86
VAPB-201ENST00000265619 GALNT15Q8N3T1 639 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 ZBTB38Q8NAP3 1195 aaPredicted RBP9.65□□□□□ -0.86
VAPB-201ENST00000265619 OXER1Q8TDS5 423 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 OSBP2Q969R2 916 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 CTAGE1Q96RT6 745 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 HAUS7Q99871 368 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 LNPEPQ9UIQ6 1025 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 BLOC1S6Q9UL45 172 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 SH3TC1Q8TE82 1336 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 UTRNP46939 3433 aa9.65□□□□□ -0.86
VAPB-201ENST00000265619 LRRC10BA6NIK2 292 aa9.65□□□□□ -0.87
VAPB-201ENST00000265619 MAGOHP61326 146 aaKnown RBP9.65□□□□□ -0.87
VAPB-201ENST00000265619 GKAP1Q5VSY0 366 aaPredicted RBP9.65□□□□□ -0.87
VAPB-201ENST00000265619 INTS5Q6P9B9 1019 aaKnown RBP9.65□□□□□ -0.87
VAPB-201ENST00000265619 MICU3Q86XE3 530 aa9.65□□□□□ -0.87
VAPB-201ENST00000265619 KBTBD3Q8NAB2 608 aa9.65□□□□□ -0.87
VAPB-201ENST00000265619 FAM81AQ8TBF8 368 aa9.65□□□□□ -0.87
VAPB-201ENST00000265619 MAGOHBQ96A72 148 aaKnown RBP9.65□□□□□ -0.87
VAPB-201ENST00000265619 KRT12Q99456 494 aa9.65□□□□□ -0.87
VAPB-201ENST00000265619 ADAM22Q9P0K1 906 aa9.65□□□□□ -0.87
VAPB-201ENST00000265619 PACSIN2Q9UNF0 486 aaPredicted RBP9.65□□□□□ -0.87
VAPB-201ENST00000265619 GDAQ9Y2T3 454 aa9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms