RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 MED4Q9NPJ6 270 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 PNMA6FA0A0J9YX94 578 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 SH3BP5O60239 455 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 TECP42680 631 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 NELFCDQ8IXH7 590 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 ATP2A3Q93084 1043 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 ABT1Q9ULW3 272 aaKnown RBP13.93□□□□□ -0.18
USP40-201ENST00000251722 NFKBIAP25963 317 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 PPFIA1Q13136 1202 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 RCSD1Q6JBY9 416 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 SELENOSQ9BQE4 189 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 SERTAD1Q9UHV2 236 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 ME3Q16798 604 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 PEX26Q7Z412 305 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 CCDC89Q8N998 374 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 SLC12A6Q9UHW9 1150 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 CLRN2A0PK11 232 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 PDIA3P30101 505 aaKnown RBP13.92□□□□□ -0.18
USP40-201ENST00000251722 TADA2BQ86TJ2 420 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 SP8Q8IXZ3 490 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 NEK9Q8TD19 979 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 MED7O43513 233 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 USP17L2Q6R6M4 530 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 TRIM58Q8NG06 486 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 LRRIQ4A6NIV6 560 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 ZNF75DP51815 510 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 PAK2Q13177 524 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 KARSQ15046 597 aaKnown RBP13.92□□□□□ -0.18
USP40-201ENST00000251722 HSP90AA5PQ58FG0 334 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 SLFN12LQ6IEE8 588 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 TTLL11Q8NHH1 800 aa13.92□□□□□ -0.18
USP40-201ENST00000251722 LSM14BQ9BX40 385 aaKnown RBP13.92□□□□□ -0.18
USP40-201ENST00000251722 LMNB2Q03252 620 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 KRT81Q14533 505 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 ZC3H13Q5T200 1668 aaKnown RBP13.91□□□□□ -0.18
USP40-201ENST00000251722 CASQ2O14958 399 aaPredicted RBP13.91□□□□□ -0.18
USP40-201ENST00000251722 ECM2O94769 699 aaPredicted RBP13.91□□□□□ -0.18
USP40-201ENST00000251722 PFKFB1P16118 471 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 MORC3Q14149 939 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 SUSD4Q5VX71 490 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 RASEFQ8IZ41 740 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 CAPZA3Q96KX2 299 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 KIAA1468Q9P260 1216 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 SEPT9Q9UHD8 586 aaPredicted RBP13.91□□□□□ -0.18
USP40-201ENST00000251722 ABCB11O95342 1321 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 KCNJ18B7U540 433 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 PPFIA4O75335 1185 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 PHBP35232 272 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 SLC12A2P55011 1212 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 KCNJ12Q14500 433 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 RASIP1Q5U651 963 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 OR8K1Q8NGG5 319 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 FAM71BQ8TC56 605 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 TAB2Q9NYJ8 693 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 NUB1Q9Y5A7 615 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 CLTCL1P53675 1640 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 PTK2Q05397 1052 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 RINT1Q6NUQ1 792 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.91□□□□□ -0.18
USP40-201ENST00000251722 COA7Q96BR5 231 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 NT5C1BQ96P26 610 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 LSG1Q9H089 658 aaKnown RBP13.91□□□□□ -0.18
USP40-201ENST00000251722 THEGQ9P2T0 379 aa13.91□□□□□ -0.18
USP40-201ENST00000251722 FAF1Q9UNN5 650 aaPredicted RBP13.91□□□□□ -0.18
USP40-201ENST00000251722 RPN1P04843 607 aaKnown RBP13.9□□□□□ -0.18
USP40-201ENST00000251722 PPP4R3CPQ6ZMV5 832 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 CCDC25Q86WR0 208 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 IFT81Q8WYA0 676 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 LARP4BQ92615 738 aaKnown RBP13.9□□□□□ -0.18
USP40-201ENST00000251722 SUGCTQ9HAC7 445 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 PSMC2P35998 433 aaKnown RBP13.9□□□□□ -0.18
USP40-201ENST00000251722 CYP2J2P51589 502 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 FRMPD1Q5SYB0 1578 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 APOA5Q6Q788 366 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 CDC42BPBQ9Y5S2 1711 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 FRMD3A2A2Y4 597 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 USP17L5A8MUK1 530 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 HIP1RO75146 1068 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 IFNAR1P17181 557 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 LMNB1P20700 586 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 ADORA1P30542 326 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 PNMA8AQ86V59 439 aaPredicted RBP13.9□□□□□ -0.18
USP40-201ENST00000251722 LDHAP00338 332 aaKnown RBP13.9□□□□□ -0.18
USP40-201ENST00000251722 PDE1CQ14123 709 aaPredicted RBP13.9□□□□□ -0.18
USP40-201ENST00000251722 PRPSAP1Q14558 356 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 PUS3Q9BZE2 481 aaKnown RBP13.9□□□□□ -0.18
USP40-201ENST00000251722 RABEP2Q9H5N1 569 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 PFDN4Q9NQP4 134 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 TYW1Q9NV66 732 aaKnown RBP13.9□□□□□ -0.18
USP40-201ENST00000251722 AKT3Q9Y243 479 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 MYO1EQ12965 1108 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 SEMA3FQ13275 785 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 SPATA1Q5VX52 437 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 ARL6IP4Q66PJ3 421 aaKnown RBP13.9□□□□□ -0.18
USP40-201ENST00000251722 VPS52Q8N1B4 723 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 SPON1Q9HCB6 807 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 POLR3EQ9NVU0 708 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 ASIC3Q9UHC3 531 aa13.9□□□□□ -0.18
USP40-201ENST00000251722 EEF1GP26641 437 aaKnown RBP13.89□□□□□ -0.19
USP40-201ENST00000251722 TNFAIP2Q03169 654 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms