RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 CCDC92Q53HC0 331 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-201ENST00000011700 WDR19Q8NEZ3 1342 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 GAS7O60861 476 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 KAZNQ674X7 775 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 WAPLQ7Z5K2 1190 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 NOSTRINQ8IVI9 506 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 LRRC8AQ8IWT6 810 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 SCYL3Q8IZE3 742 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 MAGEB6Q8N7X4 407 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 C3orf20Q8ND61 904 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 NELFBQ8WX92 580 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 BAIAP2L1Q9UHR4 511 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 NUB1Q9Y5A7 615 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 CMA1P23946 247 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 MORF4L2Q15014 288 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 ARMCX2Q7L311 632 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 C2CD5Q86YS7 1000 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 THOC1Q96FV9 657 aaKnown RBP6.57□□□□□ -1.36
VPS13D-201ENST00000011700 TRIM55Q9BYV6 548 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 MRPL11Q9Y3B7 192 aaKnown RBP6.57□□□□□ -1.36
VPS13D-201ENST00000011700 CAPN7Q9Y6W3 813 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 KCNJ18B7U540 433 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 GTPBP6O43824 516 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-201ENST00000011700 PPP6R2O75170 966 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 H2AFZP0C0S5 128 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 HSPA13P48723 471 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 KCNJ12Q14500 433 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 ASPRV1Q53RT3 343 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 SLFN12LQ6IEE8 588 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 H2AFVQ71UI9 128 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 CRLF3Q8IUI8 442 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 WDR75Q8IWA0 830 aaKnown RBP6.57□□□□□ -1.36
VPS13D-201ENST00000011700 LZICQ8WZA0 190 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 ALKBH8Q96BT7 664 aaKnown RBP6.57□□□□□ -1.36
VPS13D-201ENST00000011700 CCDC17Q96LX7 622 aa6.57□□□□□ -1.36
VPS13D-201ENST00000011700 EML4Q9HC35 981 aaKnown RBP6.57□□□□□ -1.36
VPS13D-201ENST00000011700 PAIP2BQ9ULR5 123 aaKnown RBP6.57□□□□□ -1.36
VPS13D-201ENST00000011700 FAM177BA6PVY3 158 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 GNGT2O14610 69 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 PDE6AP16499 860 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 DHX9Q08211 1270 aaKnown RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 HERC4Q5GLZ8 1057 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 BPIFA3Q9BQP9 254 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 DDX21Q9NR30 783 aaKnown RBP eCLIP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 WDR64B1ANS9 1081 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 ATP2C2O75185 946 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 MFAP3P55082 362 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 MECOMQ03112 1051 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 ANLNQ9NQW6 1124 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 LRWD1Q9UFC0 647 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 MDM2Q00987 491 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 LONRF2Q1L5Z9 754 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 PLEKHM2Q8IWE5 1019 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 MIGA1Q8NAN2 632 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 CFAP61Q8NHU2 1237 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 RSPH1Q8WYR4 309 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 RNF26Q9BY78 433 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 STX18Q9P2W9 335 aaKnown RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 A2ML1A8K2U0 1454 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 TXNDC9O14530 226 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 ZBED4O75132 1171 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 DPY19L2Q6NUT2 758 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 FRMD8Q9BZ67 464 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 SP100P23497 879 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 CASP14P31944 242 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 ECE1P42892 770 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 CCT5P48643 541 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 PPP2R5CQ13362 524 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 SPATA1Q5VX52 437 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 TRIM72Q6ZMU5 477 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 ZBTB18Q99592 522 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 CDC23Q9UJX2 597 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 SRPRBQ9Y5M8 271 aaKnown RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 SH3TC1Q8TE82 1336 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 TARSL2A2RTX5 802 aaKnown RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 GRID2IPA4D2P6 1211 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 TNPO2O14787 897 aaKnown RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 HOXB6P17509 224 aaKnown RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 CDC42EP1Q00587 391 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 PLS1Q14651 629 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 SYDE1Q6ZW31 735 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 CENPUQ71F23 418 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 APBB2Q92870 758 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 SNX25Q9H3E2 840 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 ZNF215Q9UL58 517 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 RNF123Q5XPI4 1314 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 C16orf96A6NNT2 1141 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 SGSM2O43147 1006 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 RAD51AP2Q09MP3 1159 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 GRAMD4Q6IC98 578 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 FAM178BQ8IXR5 827 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 SH3GL3Q99963 347 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 WDR11Q9BZH6 1224 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 DEFA1P59665 94 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 DEFA3P59666 94 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 TRAIPQ9BWF2 469 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 SH3GLB2Q9NR46 395 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 CHCHD3Q9NX63 227 aaKnown RBP6.56□□□□□ -1.36
VPS13D-201ENST00000011700 ZMYM6O95789 1325 aa6.56□□□□□ -1.36
VPS13D-201ENST00000011700 TTC3P53804 2025 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms