RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	MPHOSPH6	Q99547	160 aa	Known RBP	11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	MYL10	Q9BUA6	226 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	MRPL11	Q9Y3B7	192 aa	Known RBP	11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141		Q9Y3F1	56 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	PCDHA1	Q9Y5I3	950 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141		A0A0C4DFX4	3053 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	PALM3	A6NDB9	673 aa	Predicted RBP	11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	RBAK-RBAKDN	I3L0D1	243 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	OPLAH	O14841	1288 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	CABYR	O75952	493 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	CYP2C9	P11712	490 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	MYCL	P12524	364 aa	Predicted RBP	11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	EDNRB	P24530	442 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	NT5C2	P49902	561 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	CPT1A	P50416	773 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	ANTXR2	P58335	489 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	FAM47C	Q5HY64	1035 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	ARHGEF16	Q5VV41	709 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	FAM109B	Q6ICB4	259 aa	Predicted RBP	11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	MCF2L2	Q86YR7	1114 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	RAB11FIP4	Q86YS3	637 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	SLC43A3	Q8NBI5	491 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	NSUN6	Q8TEA1	469 aa	Known RBP	11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	SCFD2	Q8WU76	684 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	GUCD1	Q96NT3	240 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	AMN	Q9BXJ7	453 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	HIPK3	Q9H422	1215 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	TRMT13	Q9NUP7	481 aa	Known RBP	11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	LRRC37A2	A6NM11	1700 aa		11.97	□□□□□ -0.49
SCN1A-222	ENST00000642141	GRXCR1	A8MXD5	290 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141		B4DLN1	442 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	ZBTB5	O15062	677 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	MRPL12	P52815	198 aa	Known RBP	11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	PURA	Q00577	322 aa	Known RBP	11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	GRM4	Q14833	912 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	SART3	Q15020	963 aa	Known RBP	11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	STXBP2	Q15833	593 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	NBPF20	Q3BBV1	942 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	TMEM240	Q5SV17	173 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	ZNF697	Q5TEC3	545 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	ZNF365	Q70YC5	407 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	CATIP	Q7Z7H3	387 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	FCHSD1	Q86WN1	690 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	TMEM199	Q8N511	208 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	IGDCC4	Q8TDY8	1250 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	AFG1L	Q8WV93	481 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	MTG1	Q9BT17	334 aa	Predicted RBP	11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	LRRC2	Q9BYS8	371 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	SEMA6B	Q9H3T3	888 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	POLR3E	Q9NVU0	708 aa		11.96	□□□□□ -0.49
SCN1A-222	ENST00000642141	LOC102724159	A0A0B4J2E5	919 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	PRC1	O43663	620 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	CYTH3	O43739	400 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	RXRA	P19793	462 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	SMAD3	P84022	425 aa	Known RBP	11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	TROAP	Q12815	778 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	PPIG	Q13427	754 aa	Known RBP eCLIP	11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	TTLL4	Q14679	1199 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	PWP2	Q15269	919 aa	Known RBP	11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	BRDT	Q58F21	947 aa	Predicted RBP	11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	CCDC62	Q6P9F0	684 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	NFXL1	Q6ZNB6	911 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	MB21D2	Q8IYB1	491 aa	Predicted RBP	11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	CMTR1	Q8N1G2	835 aa	Known RBP	11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	MTMR8	Q96EF0	704 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	SCLY	Q96I15	445 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	CDX2	Q99626	313 aa	Predicted RBP	11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	ESYT1	Q9BSJ8	1104 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	NOC4L	Q9BVI4	516 aa	Known RBP	11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	LSG1	Q9H089	658 aa	Known RBP	11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	TTYH1	Q9H313	450 aa	Predicted RBP	11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	ANO2	Q9NQ90	1003 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	PXMP2	Q9NR77	195 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141	STXBP5L	Q9Y2K9	1186 aa		11.95	□□□□□ -0.5
SCN1A-222	ENST00000642141		A6NJR5	290 aa		11.94	□□□□□ -0.5
SCN1A-222	ENST00000642141	SLC27A2	O14975	620 aa		11.94	□□□□□ -0.5
SCN1A-222	ENST00000642141	NR3C2	P08235	984 aa		11.94	□□□□□ -0.5
SCN1A-222	ENST00000642141	PBX2	P40425	430 aa		11.94	□□□□□ -0.5
SCN1A-222	ENST00000642141	HSD17B4	P51659	736 aa		11.94	□□□□□ -0.5
SCN1A-222	ENST00000642141	CREB3L3	Q68CJ9	461 aa		11.94	□□□□□ -0.5
SCN1A-222	ENST00000642141	OTOP2	Q7RTS6	562 aa		11.94	□□□□□ -0.5
SCN1A-222	ENST00000642141	IL31RA	Q8NI17	732 aa		11.94	□□□□□ -0.5
SCN1A-222	ENST00000642141	IWS1	Q96ST2	819 aa		11.94	□□□□□ -0.5
SCN1A-222	ENST00000642141	WNT8A	Q9H1J5	351 aa		11.94	□□□□□ -0.5
SCN1A-222	ENST00000642141	RIOX1	Q9H6W3	641 aa		11.94	□□□□□ -0.5
SCN1A-222	ENST00000642141	LY9	Q9HBG7	655 aa		11.94	□□□□□ -0.5
SCN1A-222	ENST00000642141	EYS	Q5T1H1	3165 aa		11.94	□□□□□ -0.5
SCN1A-222	ENST00000642141	PNMA6F	A0A0J9YX94	578 aa		11.93	□□□□□ -0.5
SCN1A-222	ENST00000642141	hCG_1642624	A0A1W2PR95	340 aa		11.93	□□□□□ -0.5
SCN1A-222	ENST00000642141	NKRF	O15226	690 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
SCN1A-222	ENST00000642141	EIF3J	O75822	258 aa	Known RBP	11.93	□□□□□ -0.5
SCN1A-222	ENST00000642141	GH1	P01241	217 aa		11.93	□□□□□ -0.5
SCN1A-222	ENST00000642141	ARHGAP1	Q07960	439 aa		11.93	□□□□□ -0.5
SCN1A-222	ENST00000642141	CASC1	Q6TDU7	716 aa		11.93	□□□□□ -0.5
SCN1A-222	ENST00000642141	DEFB128	Q7Z7B8	93 aa		11.93	□□□□□ -0.5
SCN1A-222	ENST00000642141	ZNF654	Q8IZM8	581 aa		11.93	□□□□□ -0.5
SCN1A-222	ENST00000642141	CCDC82	Q8N4S0	544 aa		11.93	□□□□□ -0.5
SCN1A-222	ENST00000642141	MYLIP	Q8WY64	445 aa		11.93	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms