RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 TAAR1Q96RJ0 339 aa16.23■□□□□ 0.19
LINC00339-211ENST00000641009 HIPK3Q9H422 1215 aa16.23■□□□□ 0.19
LINC00339-211ENST00000641009 TANC1Q9C0D5 1861 aa16.23■□□□□ 0.19
LINC00339-211ENST00000641009 ARIH2O95376 493 aa16.22■□□□□ 0.19
LINC00339-211ENST00000641009 TXNP10599 105 aaKnown RBP16.22■□□□□ 0.19
LINC00339-211ENST00000641009 PURAQ00577 322 aaKnown RBP16.22■□□□□ 0.19
LINC00339-211ENST00000641009 CDX2Q99626 313 aaPredicted RBP16.22■□□□□ 0.19
LINC00339-211ENST00000641009 POLR3EQ9NVU0 708 aa16.22■□□□□ 0.19
LINC00339-211ENST00000641009 MAD2L2Q9UI95 211 aa16.22■□□□□ 0.19
LINC00339-211ENST00000641009 U3KPZ7 1027 aaPredicted RBP16.22■□□□□ 0.19
LINC00339-211ENST00000641009 B4DLN1 442 aa16.22■□□□□ 0.19
LINC00339-211ENST00000641009 KLRF2D3W0D1 207 aa16.22■□□□□ 0.19
LINC00339-211ENST00000641009 NKRFO15226 690 aaKnown RBP eCLIP16.22■□□□□ 0.19
LINC00339-211ENST00000641009 SGSM2O43147 1006 aa16.22■□□□□ 0.19
LINC00339-211ENST00000641009 MRPL12P52815 198 aaKnown RBP16.22■□□□□ 0.19
LINC00339-211ENST00000641009 ZNF365Q70YC5 407 aa16.22■□□□□ 0.19
LINC00339-211ENST00000641009 MCF2L2Q86YR7 1114 aa16.22■□□□□ 0.19
LINC00339-211ENST00000641009 PPP1R13LQ8WUF5 828 aa16.22■□□□□ 0.19
LINC00339-211ENST00000641009 SEZ6LQ9BYH1 1024 aa16.22■□□□□ 0.19
LINC00339-211ENST00000641009 ALDH8A1Q9H2A2 487 aaPredicted RBP16.22■□□□□ 0.19
LINC00339-211ENST00000641009 SENP2Q9HC62 589 aa16.22■□□□□ 0.19
LINC00339-211ENST00000641009 MRPL11Q9Y3B7 192 aaKnown RBP16.22■□□□□ 0.19
LINC00339-211ENST00000641009 DOCK5Q9H7D0 1870 aa16.21■□□□□ 0.19
LINC00339-211ENST00000641009 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.21■□□□□ 0.19
LINC00339-211ENST00000641009 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.21■□□□□ 0.19
LINC00339-211ENST00000641009 E7EWF7 191 aa16.21■□□□□ 0.19
LINC00339-211ENST00000641009 IFIT3O14879 490 aaKnown RBP16.21■□□□□ 0.19
LINC00339-211ENST00000641009 PPP1R11O60927 126 aaPredicted RBP16.21■□□□□ 0.19
LINC00339-211ENST00000641009 CFBP00751 764 aa16.21■□□□□ 0.19
LINC00339-211ENST00000641009 DNAJB2P25686 324 aa16.21■□□□□ 0.19
LINC00339-211ENST00000641009 CCL23P55773 120 aa16.21■□□□□ 0.19
LINC00339-211ENST00000641009 TTLL4Q14679 1199 aa16.21■□□□□ 0.19
LINC00339-211ENST00000641009 STOX1Q6ZVD7 989 aa16.21■□□□□ 0.19
LINC00339-211ENST00000641009 CHST3Q7LGC8 479 aa16.21■□□□□ 0.19
LINC00339-211ENST00000641009 NSUN6Q8TEA1 469 aaKnown RBP16.21■□□□□ 0.19
LINC00339-211ENST00000641009 RMDN3Q96TC7 470 aa16.21■□□□□ 0.19
LINC00339-211ENST00000641009 MTG1Q9BT17 334 aaPredicted RBP16.21■□□□□ 0.19
LINC00339-211ENST00000641009 NOC4LQ9BVI4 516 aaKnown RBP16.21■□□□□ 0.19
LINC00339-211ENST00000641009 IL23AQ9NPF7 189 aa16.21■□□□□ 0.19
LINC00339-211ENST00000641009 GPHNQ9NQX3 736 aaPredicted RBP16.21■□□□□ 0.19
LINC00339-211ENST00000641009 TRMT13Q9NUP7 481 aaKnown RBP16.21■□□□□ 0.19
LINC00339-211ENST00000641009 REV3LO60673 3130 aa16.21■□□□□ 0.18
LINC00339-211ENST00000641009 PALM3A6NDB9 673 aaPredicted RBP16.2■□□□□ 0.18
LINC00339-211ENST00000641009 A6NJR5 290 aa16.2■□□□□ 0.18
LINC00339-211ENST00000641009 OPLAHO14841 1288 aa16.2■□□□□ 0.18
LINC00339-211ENST00000641009 EIF2AK2P19525 551 aaKnown RBP16.2■□□□□ 0.18
LINC00339-211ENST00000641009 LY6KQ17RY6 165 aa16.2■□□□□ 0.18
LINC00339-211ENST00000641009 BRDTQ58F21 947 aaPredicted RBP16.2■□□□□ 0.18
LINC00339-211ENST00000641009 CCDC62Q6P9F0 684 aa16.2■□□□□ 0.18
LINC00339-211ENST00000641009 PSRC1Q6PGN9 363 aaPredicted RBP16.2■□□□□ 0.18
LINC00339-211ENST00000641009 SEPT14Q6ZU15 432 aa16.2■□□□□ 0.18
LINC00339-211ENST00000641009 RALYLQ86SE5 291 aaKnown RBP16.2■□□□□ 0.18
LINC00339-211ENST00000641009 MYLIPQ8WY64 445 aa16.2■□□□□ 0.18
LINC00339-211ENST00000641009 MTMR8Q96EF0 704 aa16.2■□□□□ 0.18
LINC00339-211ENST00000641009 AMNQ9BXJ7 453 aa16.2■□□□□ 0.18
LINC00339-211ENST00000641009 MAF1Q9H063 256 aa16.2■□□□□ 0.18
LINC00339-211ENST00000641009 WNT8AQ9H1J5 351 aa16.2■□□□□ 0.18
LINC00339-211ENST00000641009 TET1Q8NFU7 2136 aa16.2■□□□□ 0.18
LINC00339-211ENST00000641009 GRXCR1A8MXD5 290 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 CYP2C9P11712 490 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 GRM4Q14833 912 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 WTAPQ15007 396 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 STXBP2Q15833 593 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 SLC35G1Q2M3R5 365 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 NBPF20Q3BBV1 942 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 FAM47CQ5HY64 1035 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 RASIP1Q5U651 963 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 ARHGEF16Q5VV41 709 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 HOMER1Q86YM7 354 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 NCOA7Q8NI08 942 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 IWS1Q96ST2 819 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 PXMP2Q9NR77 195 aa16.19■□□□□ 0.18
LINC00339-211ENST00000641009 TRANK1O15050 2925 aa16.18■□□□□ 0.18
LINC00339-211ENST00000641009 ERICH2A1L162 156 aa16.18■□□□□ 0.18
LINC00339-211ENST00000641009 ZBTB5O15062 677 aa16.18■□□□□ 0.18
LINC00339-211ENST00000641009 HSD17B4P51659 736 aa16.18■□□□□ 0.18
LINC00339-211ENST00000641009 MAP4K1Q92918 833 aa16.18■□□□□ 0.18
LINC00339-211ENST00000641009 SCLYQ96I15 445 aa16.18■□□□□ 0.18
LINC00339-211ENST00000641009 CXXC1Q9P0U4 656 aaPredicted RBP16.18■□□□□ 0.18
LINC00339-211ENST00000641009 PCDHA1Q9Y5I3 950 aa16.18■□□□□ 0.18
LINC00339-211ENST00000641009 RBM8AQ9Y5S9 174 aaKnown RBP16.18■□□□□ 0.18
LINC00339-211ENST00000641009 TMEM265A0A087WTH1 108 aa16.17■□□□□ 0.18
LINC00339-211ENST00000641009 DLL1O00548 723 aa16.17■□□□□ 0.18
LINC00339-211ENST00000641009 KPNA6O60684 536 aa16.17■□□□□ 0.18
LINC00339-211ENST00000641009 PBX2P40425 430 aa16.17■□□□□ 0.18
LINC00339-211ENST00000641009 ANTXR2P58335 489 aa16.17■□□□□ 0.18
LINC00339-211ENST00000641009 CHMP4BP1P59074 171 aa16.17■□□□□ 0.18
LINC00339-211ENST00000641009 ARHGAP1Q07960 439 aa16.17■□□□□ 0.18
LINC00339-211ENST00000641009 SART3Q15020 963 aaKnown RBP16.17■□□□□ 0.18
LINC00339-211ENST00000641009 AFG1LQ8WV93 481 aa16.17■□□□□ 0.18
LINC00339-211ENST00000641009 PIGSQ96S52 555 aa16.17■□□□□ 0.18
LINC00339-211ENST00000641009 CYTH3O43739 400 aa16.16■□□□□ 0.18
LINC00339-211ENST00000641009 GH1P01241 217 aa16.16■□□□□ 0.18
LINC00339-211ENST00000641009 FGBP02675 491 aa16.16■□□□□ 0.18
LINC00339-211ENST00000641009 NR3C2P08235 984 aa16.16■□□□□ 0.18
LINC00339-211ENST00000641009 MMP3P08254 477 aa16.16■□□□□ 0.18
LINC00339-211ENST00000641009 SUPT20HL2P0C7V6 817 aa16.16■□□□□ 0.18
LINC00339-211ENST00000641009 HOXA13P31271 388 aaPredicted RBP16.16■□□□□ 0.18
LINC00339-211ENST00000641009 GHRHRQ02643 423 aa16.16■□□□□ 0.18
LINC00339-211ENST00000641009 TROAPQ12815 778 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms