RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 STIM2Q9P246 746 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 GPR75-ASB3A0A0A6YYF3 556 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 POLR3DP05423 398 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-213ENST00000636759 HNRNPCP07910 306 aaKnown RBP eCLIP7.52□□□□□ -1.21
SCN1A-213ENST00000636759 NQO1P15559 274 aaKnown RBP7.52□□□□□ -1.21
SCN1A-213ENST00000636759 YY1P25490 414 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 CBX3Q13185 183 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 MYBPC2Q14324 1141 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 SGSM1Q2NKQ1 1148 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 TMEM110Q86TL2 294 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 CTNNBL1Q8WYA6 563 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-213ENST00000636759 CAVIN3Q969G5 261 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 KLHL29Q96CT2 875 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 UTP6Q9NYH9 597 aaKnown RBP7.52□□□□□ -1.21
SCN1A-213ENST00000636759 DMGDHQ9UI17 866 aaKnown RBP7.52□□□□□ -1.21
SCN1A-213ENST00000636759 ASB3Q9Y575 518 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 PENKP01210 267 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-213ENST00000636759 CA8P35219 290 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 PSMC4P43686 418 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 SLC7A5Q01650 507 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 QPCTQ16769 361 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 RBM26Q5T8P6 1007 aaKnown RBP7.52□□□□□ -1.21
SCN1A-213ENST00000636759 EMC10Q5UCC4 262 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 RUFY4Q6ZNE9 571 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 LONP2Q86WA8 852 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 TRMT44Q8IYL2 757 aaKnown RBP7.52□□□□□ -1.21
SCN1A-213ENST00000636759 LINS1Q8NG48 757 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 CTAGE1Q96RT6 745 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 RPS6KC1Q96S38 1066 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.52□□□□□ -1.213e-8■□□□□ 9.3
SCN1A-213ENST00000636759 LRRC1Q9BTT6 524 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 DBNLQ9UJU6 430 aaKnown RBP7.52□□□□□ -1.21
SCN1A-213ENST00000636759 NEURL1BA8MQ27 555 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 GRM8O00222 908 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 USO1O60763 962 aaKnown RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 GSTA2P09210 222 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 RFC5P40937 340 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 MAP7D1Q3KQU3 841 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 PAPD7Q5XG87 772 aaKnown RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 ANO7Q6IWH7 933 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 DPY19L2Q6NUT2 758 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 FBXL16Q8N461 479 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 MMGT1Q8N4V1 131 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 RNF10Q8N5U6 811 aaKnown RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 SMC1BQ8NDV3 1235 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 ZCRB1Q8TBF4 217 aaKnown RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 ENOX1Q8TC92 643 aaKnown RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 IFT81Q8WYA0 676 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 NEK1Q96PY6 1258 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 MPHOSPH6Q99547 160 aaKnown RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 TCHPQ9BT92 498 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 SENP2Q9HC62 589 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 GMEB1Q9Y692 573 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 EPN1Q9Y6I3 576 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 DISP2A7MBM2 1401 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 CICQ96RK0 1608 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 ZNF233A6NK53 670 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 PHF20L1A8MW92 1017 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 ABL1P00519 1130 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 SP100P23497 879 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 RPL13P26373 211 aaKnown RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 PSMD7P51665 324 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 EXOSC10Q01780 885 aaKnown RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 PTPN12Q05209 780 aaKnown RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 ITGB3BPQ13352 177 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 MKRN4PQ13434 485 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 NR1I3Q14994 352 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 RNF220Q5VTB9 566 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 SPICE1Q8N0Z3 855 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 MLKLQ8NB16 471 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 ZNF496Q96IT1 587 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 ARPC5LQ9BPX5 153 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 COPRSQ9NQ92 184 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 HELLSQ9NRZ9 838 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 PCDH11XQ9BZA7 1347 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 PCDH11YQ9BZA8 1340 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 LTBP4Q8N2S1 1624 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 hCG_2014768A0A024R1R8 64 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 A0A0G2JLW4 131 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 MARCKSP29966 332 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 ALDH5A1P51649 535 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 KRT83P78385 493 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 MRPS25P82663 173 aaKnown RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 PABPC4Q13310 644 aaKnown RBP eCLIP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 SLC39A6Q13433 755 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 IMMTQ16891 758 aaKnown RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 KIAA0753Q2KHM9 967 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 BICDL1Q6ZP65 573 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 SESTD1Q86VW0 696 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 RAB11FIP4Q86YS3 637 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 ARHGAP18Q8N392 663 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 ATP11CQ8NB49 1132 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 TEKT1Q969V4 418 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 ZNF653Q96CK0 615 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 EDC3Q96F86 508 aaKnown RBP7.51□□□□□ -1.21
SCN1A-213ENST00000636759 SYT15Q9BQS2 421 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 NACA2Q9H009 215 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 PCDHA5Q9Y5H7 936 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms