RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 SPDYE3A6NKU9 549 aa16.08■□□□□ 0.16
CLN3-242ENST00000635958 SPTLC2O15270 562 aa16.08■□□□□ 0.16
CLN3-242ENST00000635958 HOXA13P31271 388 aaPredicted RBP16.08■□□□□ 0.16
CLN3-242ENST00000635958 GCLCP48506 637 aaPredicted RBP16.08■□□□□ 0.16
CLN3-242ENST00000635958 STK38Q15208 465 aa16.08■□□□□ 0.16
CLN3-242ENST00000635958 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.08■□□□□ 0.16
CLN3-242ENST00000635958 TXNRD2Q9NNW7 524 aa16.08■□□□□ 0.16
CLN3-242ENST00000635958 SLC25A27O95847 323 aa16.07■□□□□ 0.16
CLN3-242ENST00000635958 CYP2C8P10632 490 aa16.07■□□□□ 0.16
CLN3-242ENST00000635958 ATP2B1P20020 1258 aa16.07■□□□□ 0.16
CLN3-242ENST00000635958 COPB2P35606 906 aa16.07■□□□□ 0.16
CLN3-242ENST00000635958 SREBF1P36956 1147 aa16.07■□□□□ 0.16
CLN3-242ENST00000635958 ZNF174Q15697 407 aa16.07■□□□□ 0.16
CLN3-242ENST00000635958 PPP4R3AQ6IN85 833 aa16.07■□□□□ 0.16
CLN3-242ENST00000635958 MTERF4Q7Z6M4 381 aaKnown RBP16.07■□□□□ 0.16
CLN3-242ENST00000635958 C4orf32Q8N8J7 132 aa16.07■□□□□ 0.16
CLN3-242ENST00000635958 PGBD1Q96JS3 809 aa16.07■□□□□ 0.16
CLN3-242ENST00000635958 PDCL3Q9H2J4 239 aa16.07■□□□□ 0.16
CLN3-242ENST00000635958 ACAD9Q9H845 621 aa16.07■□□□□ 0.16
CLN3-242ENST00000635958 CREBZFQ9NS37 354 aa16.07■□□□□ 0.16
CLN3-242ENST00000635958 FBXO40Q9UH90 709 aa16.07■□□□□ 0.16
CLN3-242ENST00000635958 CYP3A7-CYP3A51PA0A087WV96 503 aa16.06■□□□□ 0.16
CLN3-242ENST00000635958 CYP3A4P08684 503 aa16.06■□□□□ 0.16
CLN3-242ENST00000635958 CYP3A7P24462 503 aa16.06■□□□□ 0.16
CLN3-242ENST00000635958 UBE2HP62256 183 aa16.06■□□□□ 0.16
CLN3-242ENST00000635958 PLS1Q14651 629 aa16.06■□□□□ 0.16
CLN3-242ENST00000635958 Q3C1V9 767 aa16.06■□□□□ 0.16
CLN3-242ENST00000635958 MOXD1Q6UVY6 613 aa16.06■□□□□ 0.16
CLN3-242ENST00000635958 JMYQ8N9B5 988 aa16.06■□□□□ 0.16
CLN3-242ENST00000635958 SYTL5Q8TDW5 730 aaPredicted RBP16.06■□□□□ 0.16
CLN3-242ENST00000635958 PARK7Q99497 189 aaKnown RBP16.06■□□□□ 0.16
CLN3-242ENST00000635958 NAP1L4Q99733 375 aaKnown RBP16.06■□□□□ 0.16
CLN3-242ENST00000635958 MOV10L1Q9BXT6 1211 aaKnown RBP16.06■□□□□ 0.16
CLN3-242ENST00000635958 HOMER2Q9NSB8 354 aa16.06■□□□□ 0.16
CLN3-242ENST00000635958 MORF4L1Q9UBU8 362 aa16.06■□□□□ 0.16
CLN3-242ENST00000635958 RASSF10A6NK89 507 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 IGF2BP3O00425 579 aaKnown RBP eCLIP16.05■□□□□ 0.16
CLN3-242ENST00000635958 GADD45BO75293 160 aaPredicted RBP16.05■□□□□ 0.16
CLN3-242ENST00000635958 TM4SF4P48230 202 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 RPS6P62753 249 aaKnown RBP16.05■□□□□ 0.16
CLN3-242ENST00000635958 ATP2C1P98194 919 aaPredicted RBP16.05■□□□□ 0.16
CLN3-242ENST00000635958 LETM2Q2VYF4 491 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 RNF207Q6ZRF8 634 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 SHCBP1Q8NEM2 672 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 PAGR1Q9BTK6 254 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 PCDHA7Q9UN72 937 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 SYCE3A1L190 88 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 PEX10O60683 326 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 GCFC2P16383 781 aaKnown RBP16.05■□□□□ 0.16
CLN3-242ENST00000635958 PTPREP23469 700 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 CIITAP33076 1130 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 ERVK-9P63128 1117 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 ERVK-24P63145 666 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 ARHGAP4P98171 946 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 PTGDRQ13258 359 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 AXDND1Q5T1B0 1012 aaPredicted RBP16.05■□□□□ 0.16
CLN3-242ENST00000635958 ADALQ6DHV7 355 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 FCHSD1Q86WN1 690 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 SMCR8Q8TEV9 937 aaPredicted RBP16.05■□□□□ 0.16
CLN3-242ENST00000635958 MBOAT7Q96N66 472 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 EHMT1Q9H9B1 1298 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 COL20A1Q9P218 1284 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 SRPRBQ9Y5M8 271 aaKnown RBP16.05■□□□□ 0.16
CLN3-242ENST00000635958 MYH7BA7E2Y1 1941 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 RPTORQ8N122 1335 aa16.05■□□□□ 0.16
CLN3-242ENST00000635958 LAD1O00515 517 aa16.04■□□□□ 0.16
CLN3-242ENST00000635958 CCNT1O60563 726 aaKnown RBP16.04■□□□□ 0.16
CLN3-242ENST00000635958 MCM7P33993 719 aa16.04■□□□□ 0.16
CLN3-242ENST00000635958 SREBF2Q12772 1141 aa16.04■□□□□ 0.16
CLN3-242ENST00000635958 BAATQ14032 418 aaPredicted RBP16.04■□□□□ 0.16
CLN3-242ENST00000635958 ARL6IP4Q66PJ3 421 aaKnown RBP16.04■□□□□ 0.16
CLN3-242ENST00000635958 IFNL1Q8IU54 200 aa16.04■□□□□ 0.16
CLN3-242ENST00000635958 GPRC5AQ8NFJ5 357 aa16.04■□□□□ 0.16
CLN3-242ENST00000635958 MROH8Q9H579 483 aa16.04■□□□□ 0.16
CLN3-242ENST00000635958 A1CFQ9NQ94 594 aaKnown RBP16.04■□□□□ 0.16
CLN3-242ENST00000635958 CYP39A1Q9NYL5 469 aa16.04■□□□□ 0.16
CLN3-242ENST00000635958 FRMPD4Q14CM0 1322 aa16.04■□□□□ 0.16
CLN3-242ENST00000635958 MARCKSP29966 332 aaPredicted RBP16.03■□□□□ 0.16
CLN3-242ENST00000635958 ME1P48163 572 aa16.03■□□□□ 0.16
CLN3-242ENST00000635958 DEFB115Q30KQ5 88 aa16.03■□□□□ 0.16
CLN3-242ENST00000635958 CCDC183Q5T5S1 534 aa16.03■□□□□ 0.16
CLN3-242ENST00000635958 NSMFQ6X4W1 530 aa16.03■□□□□ 0.16
CLN3-242ENST00000635958 FBXO2Q9UK22 296 aaPredicted RBP16.03■□□□□ 0.16
CLN3-242ENST00000635958 RBBP6Q7Z6E9 1792 aaKnown RBP16.03■□□□□ 0.16
CLN3-242ENST00000635958 ADGRA2Q96PE1 1338 aa16.03■□□□□ 0.16
CLN3-242ENST00000635958 A0A1W2PQ27 194 aa16.03■□□□□ 0.16
CLN3-242ENST00000635958 A0A1W2PQ64 194 aa16.03■□□□□ 0.16
CLN3-242ENST00000635958 A0A1W2PQD8 194 aa16.03■□□□□ 0.16
CLN3-242ENST00000635958 ERCC3P19447 782 aa16.03■□□□□ 0.16
CLN3-242ENST00000635958 PRPHP41219 470 aa16.03■□□□□ 0.16
CLN3-242ENST00000635958 NOGQ13253 232 aa16.03■□□□□ 0.16
CLN3-242ENST00000635958 SLC30A10Q6XR72 485 aa16.03■□□□□ 0.16
CLN3-242ENST00000635958 KRI1Q8N9T8 703 aaKnown RBP16.03■□□□□ 0.16
CLN3-242ENST00000635958 ZNF579Q8NAF0 562 aaKnown RBP16.03■□□□□ 0.16
CLN3-242ENST00000635958 FERMT2Q96AC1 680 aa16.03■□□□□ 0.16
CLN3-242ENST00000635958 PFASO15067 1338 aa16.02■□□□□ 0.16
CLN3-242ENST00000635958 CUTAO60888 179 aa16.02■□□□□ 0.16
CLN3-242ENST00000635958 CCNA1P78396 465 aa16.02■□□□□ 0.16
CLN3-242ENST00000635958 CYP4F22Q6NT55 531 aa16.02■□□□□ 0.16
CLN3-242ENST00000635958 NCAPG2Q86XI2 1143 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms