RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	ME1	P48163	572 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	GRIN1	Q05586	938 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	BTNL9	Q6UXG8	535 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	BICD2	Q8TD16	824 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	PAWR	Q96IZ0	340 aa	Known RBP	10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ASCC2	Q9H1I8	757 aa	Predicted RBP	10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	DACT1	Q9NYF0	836 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	TMOD4	Q9NZQ9	345 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	GJD2	Q9UKL4	321 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	PCDHA6	Q9UN73	950 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	PCDHA8	Q9Y5H6	950 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587		A0A1W2PQ27	194 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587		A0A1W2PQ64	194 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587		A0A1W2PQD8	194 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	hCG_1984214	I3L0E3	225 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ZBTB5	O15062	677 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	HMGCS2	P54868	508 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	NAPA	P54920	295 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	CCDC183	Q5T5S1	534 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	GALNT17	Q6IS24	598 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	GPR153	Q6NV75	609 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	PIK3AP1	Q6ZUJ8	805 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ZNF713	Q8N859	430 aa	Predicted RBP	10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	VCPKMT	Q9H867	229 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SMCO2	A6NFE2	343 aa		10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	EDIL3	O43854	480 aa		10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	BMP3	P12645	472 aa		10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	XRCC5	P13010	732 aa	Known RBP	10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	IRX3	P78415	501 aa	Predicted RBP	10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	QRICH1	Q2TAL8	776 aa		10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SHC4	Q6S5L8	630 aa		10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	CCAR1	Q8IX12	1150 aa	Known RBP	10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	FMR1NB	Q8N0W7	255 aa	Predicted RBP	10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	CLIC6	Q96NY7	704 aa		10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SH2D4A	Q9H788	454 aa		10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	FBXO2	Q9UK22	296 aa	Predicted RBP	10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	MORC2	Q9Y6X9	1032 aa	Predicted RBP	10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	COL11A1	P12107	1806 aa	Predicted RBP	10.84	□□□□□ -0.67
PDLIM5-223	ENST00000627587	TMEM232	C9JQI7	657 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	PTPRE	P23469	700 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	DEK	P35659	375 aa	Known RBP	10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	BACE1	P56817	501 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	SNAP25	P60880	206 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CDC37	Q16543	378 aa	Predicted RBP	10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	FAM83B	Q5T0W9	1011 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	RBM43	Q6ZSC3	357 aa	Known RBP	10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	GPRC5A	Q8NFJ5	357 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	SOCS4	Q8WXH5	440 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	NUDT12	Q9BQG2	462 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	FUCA2	Q9BTY2	467 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	GOPC	Q9HD26	462 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	NOL7	Q9UMY1	257 aa	Known RBP	10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	LOC285556	D6RIA3	1793 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	DOCK3	Q8IZD9	2030 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	FAM237A	A0A1B0GTK4	181 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587		A0A1B0GVL5	298 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	TAL1	P17542	331 aa	Predicted RBP	10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	ATP2B1	P20020	1258 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	GNA11	P29992	359 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	MAPK4	P31152	587 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CLK2	P49760	499 aa	Known RBP	10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	NDUFA8	P51970	172 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	ZYX	Q15942	572 aa	Known RBP	10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	TTC38	Q5R3I4	469 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	SYDE2	Q5VT97	1194 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	LRSAM1	Q6UWE0	723 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	C4orf32	Q8N8J7	132 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	FSIP1	Q8NA03	581 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	MRPS27	Q92552	414 aa	Known RBP	10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	C11orf49	Q9H6J7	331 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	C6orf50	Q9HD87	102 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	TMEM260	Q9NX78	707 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	OGDHL	Q9ULD0	1010 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	PRR12	Q9ULL5	1215 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CEP131	Q9UPN4	1083 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	HPSE	Q9Y251	543 aa		10.83	□□□□□ -0.68
PDLIM5-223	ENST00000627587	OPLAH	O14841	1288 aa		10.82	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CMA1	P23946	247 aa		10.82	□□□□□ -0.68
PDLIM5-223	ENST00000627587	TRAPPC10	P48553	1259 aa		10.82	□□□□□ -0.68
PDLIM5-223	ENST00000627587	FAM160A1	Q05DH4	1040 aa		10.82	□□□□□ -0.68
PDLIM5-223	ENST00000627587	IK	Q13123	557 aa	Predicted RBP	10.82	□□□□□ -0.68
PDLIM5-223	ENST00000627587	RESP18	Q5W5W9	173 aa		10.82	□□□□□ -0.68
PDLIM5-223	ENST00000627587	P2RX7	Q99572	595 aa	Known RBP	10.82	□□□□□ -0.68
PDLIM5-223	ENST00000627587	GDF15	Q99988	308 aa		10.82	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CLSTN2	Q9H4D0	955 aa		10.82	□□□□□ -0.68
PDLIM5-223	ENST00000627587	FBXO28	Q9NVF7	368 aa		10.82	□□□□□ -0.68
PDLIM5-223	ENST00000627587	PRR29	P0C7W0	189 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	PFKFB1	P16118	471 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	STAT2	P52630	851 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	ATP2C1	P98194	919 aa	Predicted RBP	10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	ZNF174	Q15697	407 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	IL17A	Q16552	155 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CAMK4	Q16566	473 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	INF2	Q27J81	1249 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	PPP1R18	Q6NYC8	613 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CCDC73	Q6ZRK6	1079 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	SLC17A8	Q8NDX2	589 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	KIAA1683	Q9H0B3	1180 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	RIC8A	Q9NPQ8	531 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	DDX19A	Q9NUU7	478 aa	Known RBP	10.81	□□□□□ -0.68

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