RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 VPS54Q9P1Q0 977 aa15.56■□□□□ 0.08
LINC00540-202ENST00000616974 SYNGAP1Q96PV0 1343 aa15.56■□□□□ 0.08
LINC00540-202ENST00000616974 PFKFB2O60825 505 aa15.56■□□□□ 0.08
LINC00540-202ENST00000616974 ARIH2O95376 493 aa15.56■□□□□ 0.08
LINC00540-202ENST00000616974 MYCNP04198 464 aaPredicted RBP15.56■□□□□ 0.08
LINC00540-202ENST00000616974 IFNAR1P17181 557 aa15.56■□□□□ 0.08
LINC00540-202ENST00000616974 RASGRP4Q8TDF6 673 aa15.56■□□□□ 0.08
LINC00540-202ENST00000616974 SLC5A4Q9NY91 659 aa15.56■□□□□ 0.08
LINC00540-202ENST00000616974 SORBS3O60504 671 aa15.55■□□□□ 0.08
LINC00540-202ENST00000616974 FDPSP14324 419 aaKnown RBP15.55■□□□□ 0.08
LINC00540-202ENST00000616974 EDNRBP24530 442 aa15.55■□□□□ 0.08
LINC00540-202ENST00000616974 PFKFB3Q16875 520 aaPredicted RBP15.55■□□□□ 0.08
LINC00540-202ENST00000616974 ZNF467Q7Z7K2 595 aaPredicted RBP15.55■□□□□ 0.08
LINC00540-202ENST00000616974 COPS5Q92905 334 aa15.55■□□□□ 0.08
LINC00540-202ENST00000616974 CRISPLD2Q9H0B8 497 aa15.55■□□□□ 0.08
LINC00540-202ENST00000616974 SLKQ9H2G2 1235 aaPredicted RBP15.55■□□□□ 0.08
LINC00540-202ENST00000616974 PXMP2Q9NR77 195 aa15.55■□□□□ 0.08
LINC00540-202ENST00000616974 DDX20Q9UHI6 824 aaKnown RBP15.55■□□□□ 0.08
LINC00540-202ENST00000616974 SCG2P13521 617 aa15.55■□□□□ 0.08
LINC00540-202ENST00000616974 FOSBP53539 338 aa15.55■□□□□ 0.08
LINC00540-202ENST00000616974 NAPAP54920 295 aa15.55■□□□□ 0.08
LINC00540-202ENST00000616974 GHRHRQ02643 423 aa15.55■□□□□ 0.08
LINC00540-202ENST00000616974 RGS22Q8NE09 1264 aa15.55■□□□□ 0.08
LINC00540-202ENST00000616974 GTF3C6Q969F1 213 aa15.55■□□□□ 0.08
LINC00540-202ENST00000616974 BARHL2Q9NY43 387 aa15.55■□□□□ 0.08
LINC00540-202ENST00000616974 TELO2Q9Y4R8 837 aa15.55■□□□□ 0.08
LINC00540-202ENST00000616974 TRIOBPQ9H2D6 2365 aa15.54■□□□□ 0.08
LINC00540-202ENST00000616974 GCOM1H8Y6P7 765 aaPredicted RBP15.54■□□□□ 0.08
LINC00540-202ENST00000616974 SEPT4O43236 478 aa15.54■□□□□ 0.08
LINC00540-202ENST00000616974 PRPF3O43395 683 aaKnown RBP15.54■□□□□ 0.08
LINC00540-202ENST00000616974 TFRCP02786 760 aaKnown RBP15.54■□□□□ 0.08
LINC00540-202ENST00000616974 POLR2MP0CAP2 368 aa15.54■□□□□ 0.08
LINC00540-202ENST00000616974 SMPD1P17405 629 aa15.54■□□□□ 0.08
LINC00540-202ENST00000616974 CCDC83Q8IWF9 413 aa15.54■□□□□ 0.08
LINC00540-202ENST00000616974 TRMT44Q8IYL2 757 aaKnown RBP15.54■□□□□ 0.08
LINC00540-202ENST00000616974 MORC4Q8TE76 937 aa15.54■□□□□ 0.08
LINC00540-202ENST00000616974 PSTPIP2Q9H939 334 aa15.54■□□□□ 0.08
LINC00540-202ENST00000616974 CNPY2Q9Y2B0 182 aa15.54■□□□□ 0.08
LINC00540-202ENST00000616974 MRPS9P82933 396 aaKnown RBP15.53■□□□□ 0.08
LINC00540-202ENST00000616974 PGM5Q15124 567 aa15.53■□□□□ 0.08
LINC00540-202ENST00000616974 PPP1R13LQ8WUF5 828 aa15.53■□□□□ 0.08
LINC00540-202ENST00000616974 PDCD2LQ9BRP1 358 aa15.53■□□□□ 0.08
LINC00540-202ENST00000616974 OGDHLQ9ULD0 1010 aa15.53■□□□□ 0.08
LINC00540-202ENST00000616974 CTAGE5O15320 804 aa15.53■□□□□ 0.08
LINC00540-202ENST00000616974 NR3C2P08235 984 aa15.53■□□□□ 0.08
LINC00540-202ENST00000616974 MYCLP12524 364 aaPredicted RBP15.53■□□□□ 0.08
LINC00540-202ENST00000616974 NPY5RQ15761 445 aa15.53■□□□□ 0.08
LINC00540-202ENST00000616974 ARHGEF16Q5VV41 709 aa15.53■□□□□ 0.08
LINC00540-202ENST00000616974 UBE2Q1Q7Z7E8 422 aa15.53■□□□□ 0.08
LINC00540-202ENST00000616974 MCF2L2Q86YR7 1114 aa15.53■□□□□ 0.08
LINC00540-202ENST00000616974 NSUN7Q8NE18 718 aaKnown RBP15.53■□□□□ 0.08
LINC00540-202ENST00000616974 PAWRQ96IZ0 340 aaKnown RBP15.53■□□□□ 0.08
LINC00540-202ENST00000616974 UIMC1Q96RL1 719 aa15.53■□□□□ 0.08
LINC00540-202ENST00000616974 RNF26Q9BY78 433 aaPredicted RBP15.53■□□□□ 0.08
LINC00540-202ENST00000616974 ABHD16BQ9H3Z7 469 aa15.53■□□□□ 0.08
LINC00540-202ENST00000616974 KCNJ14Q9UNX9 436 aa15.53■□□□□ 0.08
LINC00540-202ENST00000616974 CCDC196A0A1B0GTZ2 297 aa15.52■□□□□ 0.08
LINC00540-202ENST00000616974 SMCO2A6NFE2 343 aa15.52■□□□□ 0.08
LINC00540-202ENST00000616974 CPLX1O14810 134 aa15.52■□□□□ 0.08
LINC00540-202ENST00000616974 BEX3Q00994 111 aa15.52■□□□□ 0.08
LINC00540-202ENST00000616974 SEPT14Q6ZU15 432 aa15.52■□□□□ 0.08
LINC00540-202ENST00000616974 RTEL1Q9NZ71 1219 aa15.52■□□□□ 0.08
LINC00540-202ENST00000616974 SYNRGQ9UMZ2 1314 aa15.52■□□□□ 0.07
LINC00540-202ENST00000616974 ASB14A6NK59 587 aa15.52■□□□□ 0.07
LINC00540-202ENST00000616974 JAKMIP3Q5VZ66 844 aa15.52■□□□□ 0.07
LINC00540-202ENST00000616974 DNERQ8NFT8 737 aa15.52■□□□□ 0.07
LINC00540-202ENST00000616974 CYP2W1Q8TAV3 490 aa15.52■□□□□ 0.07
LINC00540-202ENST00000616974 ADD3Q9UEY8 706 aaKnown RBP15.52■□□□□ 0.07
LINC00540-202ENST00000616974 TRIP12Q14669 1992 aaPredicted RBP15.51■□□□□ 0.07
LINC00540-202ENST00000616974 ADAMTS4O75173 837 aa15.51■□□□□ 0.07
LINC00540-202ENST00000616974 SP2Q02086 613 aa15.51■□□□□ 0.07
LINC00540-202ENST00000616974 PDE4DQ08499 809 aa15.51■□□□□ 0.07
LINC00540-202ENST00000616974 LY6KQ17RY6 165 aa15.51■□□□□ 0.07
LINC00540-202ENST00000616974 NSUN6Q8TEA1 469 aaKnown RBP15.51■□□□□ 0.07
LINC00540-202ENST00000616974 FERMT2Q96AC1 680 aa15.51■□□□□ 0.07
LINC00540-202ENST00000616974 LIMCH1Q9UPQ0 1083 aa15.51■□□□□ 0.07
LINC00540-202ENST00000616974 EDIL3O43854 480 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 AKR1A1P14550 325 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 SSRP1Q08945 709 aaKnown RBP15.5■□□□□ 0.07
LINC00540-202ENST00000616974 SEMA3FQ13275 785 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 PPP2R5BQ15173 497 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 MSL3Q8N5Y2 521 aaKnown RBP15.5■□□□□ 0.07
LINC00540-202ENST00000616974 SMARCC2Q8TAQ2 1214 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 UPF2Q9HAU5 1272 aaKnown RBP15.5■□□□□ 0.07
LINC00540-202ENST00000616974 XPNPEP3Q9NQH7 507 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 GNEQ9Y223 722 aaKnown RBP15.5■□□□□ 0.07
LINC00540-202ENST00000616974 PIK3CDO00329 1044 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 CLK2P49760 499 aaKnown RBP15.5■□□□□ 0.07
LINC00540-202ENST00000616974 RABEP1Q15276 862 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 ANKRD1Q15327 319 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 LRRC41Q15345 812 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 VSIG10LQ86VR7 867 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 WDR11Q9BZH6 1224 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 RIC8AQ9NPQ8 531 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 PNMA2Q9UL42 364 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 FRMPD4Q14CM0 1322 aa15.5■□□□□ 0.07
LINC00540-202ENST00000616974 WDR81Q562E7 1941 aa15.49■□□□□ 0.07
LINC00540-202ENST00000616974 EYSQ5T1H1 3165 aa15.49■□□□□ 0.07
LINC00540-202ENST00000616974 ADCY7P51828 1080 aa15.49■□□□□ 0.07
LINC00540-202ENST00000616974 TNFAIP2Q03169 654 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms