RNA–Protein interactions for RNA: ENST00000611571.4

MUC1-223, Transcript of mucin 1, cell surface associated, human

APPRIS ALT2 TSL 5 BASIC

Gene MUC1, Length 4,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MUC1-223	ENST00000611571	MAN2A1	Q16706	1144 aa		15.21	■□□□□ 0.03
MUC1-223	ENST00000611571	USP37	Q86T82	979 aa		15.21	■□□□□ 0.03
MUC1-223	ENST00000611571	POTED	Q86YR6	584 aa		15.21	■□□□□ 0.03
MUC1-223	ENST00000611571	UBL4B	Q8N7F7	174 aa		15.21	■□□□□ 0.03
MUC1-223	ENST00000611571	TMEM260	Q9NX78	707 aa		15.21	■□□□□ 0.03
MUC1-223	ENST00000611571	TFRC	P02786	760 aa	Known RBP	15.21	■□□□□ 0.03
MUC1-223	ENST00000611571	DES	P17661	470 aa		15.21	■□□□□ 0.03
MUC1-223	ENST00000611571	PLTP	P55058	493 aa		15.21	■□□□□ 0.03
MUC1-223	ENST00000611571	MESD	Q14696	234 aa		15.21	■□□□□ 0.03
MUC1-223	ENST00000611571	DENND2C	Q68D51	928 aa		15.21	■□□□□ 0.03
MUC1-223	ENST00000611571	VSIG1	Q86XK7	387 aa		15.21	■□□□□ 0.03
MUC1-223	ENST00000611571	GFPT2	O94808	682 aa		15.21	■□□□□ 0.02
MUC1-223	ENST00000611571	GFPT1	Q06210	699 aa	Predicted RBP	15.21	■□□□□ 0.02
MUC1-223	ENST00000611571	SF3B2	Q13435	895 aa	Known RBP	15.21	■□□□□ 0.02
MUC1-223	ENST00000611571	PRKG1	Q13976	671 aa		15.21	■□□□□ 0.02
MUC1-223	ENST00000611571	NYAP1	Q6ZVC0	841 aa		15.21	■□□□□ 0.02
MUC1-223	ENST00000611571	TMC4	Q7Z404	712 aa		15.21	■□□□□ 0.02
MUC1-223	ENST00000611571	FAM178B	Q8IXR5	827 aa		15.21	■□□□□ 0.02
MUC1-223	ENST00000611571	TBC1D31	Q96DN5	1066 aa		15.21	■□□□□ 0.02
MUC1-223	ENST00000611571	BPIFA3	Q9BQP9	254 aa		15.21	■□□□□ 0.02
MUC1-223	ENST00000611571	DNAJC17	Q9NVM6	304 aa	Known RBP	15.21	■□□□□ 0.02
MUC1-223	ENST00000611571	JRKL	Q9Y4A0	524 aa		15.21	■□□□□ 0.02
MUC1-223	ENST00000611571	CALR	P27797	417 aa	Known RBP	15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	NAP1L3	Q99457	506 aa	Predicted RBP	15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	STMN4	Q9H169	189 aa	Predicted RBP	15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	TSKS	Q9UJT2	592 aa		15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	DLAT	P10515	647 aa	Known RBP	15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	SRBD1	Q8N5C6	995 aa	Known RBP	15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	NOA1	Q8NC60	698 aa	Known RBP	15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	AGPAT5	Q9NUQ2	364 aa		15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	GINS2	Q9Y248	185 aa		15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	ATP2A1	O14983	1001 aa		15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	N4BP1	O75113	896 aa	Known RBP	15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	PCIF1	Q9H4Z3	704 aa		15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	CD2AP	Q9Y5K6	639 aa		15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	PARP3	Q9Y6F1	533 aa		15.2	■□□□□ 0.02
MUC1-223	ENST00000611571	SETBP1	Q9Y6X0	1596 aa		15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	PRPF6	O94906	941 aa	Known RBP	15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	KRT15	P19012	456 aa		15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	ARHGAP25	P42331	645 aa		15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	SLFN13	Q68D06	897 aa		15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	INTS8	Q75QN2	995 aa	Known RBP	15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	SGMS1	Q86VZ5	419 aa		15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	PPP1R12C	Q9BZL4	782 aa		15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	DCP1A	Q9NPI6	582 aa	Predicted RBP	15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	GDF11	O95390	407 aa		15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	ZKSCAN8	Q15776	578 aa	Predicted RBP	15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	CCDC170	Q8IYT3	715 aa		15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	CACNA2D3	Q8IZS8	1091 aa		15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	MMS19	Q96T76	1030 aa		15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	15.19	■□□□□ 0.02
MUC1-223	ENST00000611571	CAMSAP1	Q5T5Y3	1602 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	LRRC53	A6NM62	1247 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	LGALS16	A8MUM7	142 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	SETDB1	Q15047	1291 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	ODR4	Q5SWX8	454 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	DDX12P	Q92771	950 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	TMEM47	Q9BQJ4	181 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	NUCKS1	Q9H1E3	243 aa	Known RBP	15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	MINPP1	Q9UNW1	487 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	BCS1L	Q9Y276	419 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	OVOS2	A0A0J9YW53	1432 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	OVOS2	Q6IE36	1432 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	USP17L15	C9J2P7	530 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	USP17L13	C9JLJ4	530 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	USP17L11	C9JVI0	530 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	USP17L18	D6R9N7	530 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	USP17L22	D6RA61	530 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	USP17L17	D6RBQ6	530 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	USP17L19	D6RCP7	530 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	GOLGA8K	D6RF30	607 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	USP17L20	D6RJB6	530 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	RPSA	P08865	295 aa	Known RBP	15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	HOXA13	P31271	388 aa	Predicted RBP	15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	CLNS1A	P54105	237 aa	Known RBP	15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	DHX9	Q08211	1270 aa	Known RBP	15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	USP17L24	Q0WX57	530 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	USP17L6P	Q6QN14	398 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	PSMD1	Q99460	953 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	EMILIN3	Q9NT22	766 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	ANKAR	Q7Z5J8	1434 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	SNX1	Q13596	522 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	CLEC10A	Q8IUN9	316 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	MAGOHB	Q96A72	148 aa	Known RBP	15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	TUBE1	Q9UJT0	475 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	COL4A3BP	Q9Y5P4	624 aa		15.18	■□□□□ 0.02
MUC1-223	ENST00000611571	EPHB4	P54760	987 aa		15.17	■□□□□ 0.02
MUC1-223	ENST00000611571	ABCC12	Q96J65	1359 aa		15.17	■□□□□ 0.02
MUC1-223	ENST00000611571	ADGRB1	O14514	1584 aa		15.17	■□□□□ 0.02
MUC1-223	ENST00000611571	USP17L5	A8MUK1	530 aa		15.17	■□□□□ 0.02
MUC1-223	ENST00000611571	TBC1D8	O95759	1140 aa		15.17	■□□□□ 0.02
MUC1-223	ENST00000611571	CERKL	Q49MI3	558 aa	Predicted RBP	15.17	■□□□□ 0.02
MUC1-223	ENST00000611571	NOVA2	Q9UNW9	492 aa	Known RBP	15.17	■□□□□ 0.02
MUC1-223	ENST00000611571	BCR	P11274	1271 aa		15.17	■□□□□ 0.02
MUC1-223	ENST00000611571	TNNI1	P19237	187 aa		15.17	■□□□□ 0.02
MUC1-223	ENST00000611571	CDK8	P49336	464 aa		15.17	■□□□□ 0.02
MUC1-223	ENST00000611571	ICA1	Q05084	483 aa		15.17	■□□□□ 0.02
MUC1-223	ENST00000611571	TRAF1	Q13077	416 aa		15.17	■□□□□ 0.02

Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms