RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 CDK7P50613 346 aa13.37□□□□□ -0.27
LINC00539-204ENST00000608957 FAAP100Q0VG06 881 aa13.37□□□□□ -0.27
LINC00539-204ENST00000608957 GNASQ5JWF2 1037 aa13.37□□□□□ -0.27
LINC00539-204ENST00000608957 BLOC1S2Q6QNY1 142 aa13.37□□□□□ -0.27
LINC00539-204ENST00000608957 NOL8Q76FK4 1167 aaKnown RBP13.37□□□□□ -0.27
LINC00539-204ENST00000608957 ZNF654Q8IZM8 581 aa13.37□□□□□ -0.27
LINC00539-204ENST00000608957 COPS5Q92905 334 aa13.37□□□□□ -0.27
LINC00539-204ENST00000608957 LRRC2Q9BYS8 371 aa13.37□□□□□ -0.27
LINC00539-204ENST00000608957 UBE2OQ9C0C9 1292 aaKnown RBP13.37□□□□□ -0.27
LINC00539-204ENST00000608957 PRDM5Q9NQX1 630 aaPredicted RBP13.37□□□□□ -0.27
LINC00539-204ENST00000608957 MRPL11Q9Y3B7 192 aaKnown RBP13.37□□□□□ -0.27
LINC00539-204ENST00000608957 CYP46A1Q9Y6A2 500 aa13.37□□□□□ -0.27
LINC00539-204ENST00000608957 GRIN2DO15399 1336 aa13.37□□□□□ -0.27
LINC00539-204ENST00000608957 ELP1O95163 1332 aa13.37□□□□□ -0.27
LINC00539-204ENST00000608957 TRIP12Q14669 1992 aaPredicted RBP13.36□□□□□ -0.27
LINC00539-204ENST00000608957 PQBP1O60828 265 aaKnown RBP13.36□□□□□ -0.27
LINC00539-204ENST00000608957 HSD17B4P51659 736 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 GHRHRQ02643 423 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 SART3Q15020 963 aaKnown RBP13.36□□□□□ -0.27
LINC00539-204ENST00000608957 FSCN1Q16658 493 aaKnown RBP13.36□□□□□ -0.27
LINC00539-204ENST00000608957 DUSP28Q4G0W2 176 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 CXCL17Q6UXB2 119 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 RUFY3Q7L099 469 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 ANKRD33Q7Z3H0 272 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 HOMER1Q86YM7 354 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 RAB11FIP4Q86YS3 637 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 TDHQ8IZJ6 230 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 PCSK9Q8NBP7 692 aaKnown RBP13.36□□□□□ -0.27
LINC00539-204ENST00000608957 NUP133Q8WUM0 1156 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 BADQ92934 168 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 NEK1Q96PY6 1258 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 AMNQ9BXJ7 453 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 WDR11Q9BZH6 1224 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 SPC25Q9HBM1 224 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 Q9Y3F1 56 aa13.36□□□□□ -0.27
LINC00539-204ENST00000608957 SCN5AQ14524 2016 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 A0A0U1RQG5 324 aaPredicted RBP13.35□□□□□ -0.27
LINC00539-204ENST00000608957 KIAA0355O15063 1070 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 PLEKHA8P1O95397 391 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 CFBP00751 764 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 CLTBP09497 229 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 RXRAP19793 462 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 RPS6KB1P23443 525 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 MCM5P33992 734 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 PDE4DQ08499 809 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 CATIPQ7Z7H3 387 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 SLC43A3Q8NBI5 491 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 PIBF1Q8WXW3 757 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 GLT1D1Q96MS3 346 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 MTA3Q9BTC8 594 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 MAF1Q9H063 256 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 AP5M1Q9H0R1 490 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 PCDHA1Q9Y5I3 950 aa13.35□□□□□ -0.27
LINC00539-204ENST00000608957 ARVCFO00192 962 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 DDAH1O94760 285 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 HMGB1P09429 215 aaKnown RBP13.34□□□□□ -0.27
LINC00539-204ENST00000608957 CPA1P15085 419 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 EIF2AK2P19525 551 aaKnown RBP13.34□□□□□ -0.27
LINC00539-204ENST00000608957 PSMC6P62333 389 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 CCDC62Q6P9F0 684 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 MCF2L2Q86YR7 1114 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 FAM126BQ8IXS8 530 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 CMTR1Q8N1G2 835 aaKnown RBP13.34□□□□□ -0.27
LINC00539-204ENST00000608957 SRBD1Q8N5C6 995 aaKnown RBP13.34□□□□□ -0.27
LINC00539-204ENST00000608957 IL31RAQ8NI17 732 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 TMEM87BQ96K49 555 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 TCEANC2Q96MN5 208 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 TOX2Q96NM4 488 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 RMDN3Q96TC7 470 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 MAP3K14Q99558 947 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 PXMP2Q9NR77 195 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 PDRG1Q9NUG6 133 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 PRKAG2Q9UGJ0 569 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 TBX21Q9UL17 535 aa13.34□□□□□ -0.27
LINC00539-204ENST00000608957 GBF1Q92538 1859 aa13.33□□□□□ -0.27
LINC00539-204ENST00000608957 PNMA6FA0A0J9YX94 578 aa13.33□□□□□ -0.28
LINC00539-204ENST00000608957 CD4P01730 458 aa13.33□□□□□ -0.28
LINC00539-204ENST00000608957 HOXA13P31271 388 aaPredicted RBP13.33□□□□□ -0.28
LINC00539-204ENST00000608957 LIFRP42702 1097 aa13.33□□□□□ -0.28
LINC00539-204ENST00000608957 EPHB4P54760 987 aa13.33□□□□□ -0.28
LINC00539-204ENST00000608957 AK2P54819 239 aa13.33□□□□□ -0.28
LINC00539-204ENST00000608957 EXOSC10Q01780 885 aaKnown RBP13.33□□□□□ -0.28
LINC00539-204ENST00000608957 LRIT3Q3SXY7 679 aa13.33□□□□□ -0.28
LINC00539-204ENST00000608957 C9orf50Q5SZB4 431 aa13.33□□□□□ -0.28
LINC00539-204ENST00000608957 OR6J1Q8NGC5 347 aa13.33□□□□□ -0.28
LINC00539-204ENST00000608957 NSUN6Q8TEA1 469 aaKnown RBP13.33□□□□□ -0.28
LINC00539-204ENST00000608957 VTI1AQ96AJ9 217 aa13.33□□□□□ -0.28
LINC00539-204ENST00000608957 LBHD1Q9BQE6 289 aaPredicted RBP13.33□□□□□ -0.28
LINC00539-204ENST00000608957 SPZ1Q9BXG8 430 aa13.33□□□□□ -0.28
LINC00539-204ENST00000608957 RGS20O76081 388 aa13.32□□□□□ -0.28
LINC00539-204ENST00000608957 PURAQ00577 322 aaKnown RBP13.32□□□□□ -0.28
LINC00539-204ENST00000608957 PPP2R5BQ15173 497 aa13.32□□□□□ -0.28
LINC00539-204ENST00000608957 SHHQ15465 462 aa13.32□□□□□ -0.28
LINC00539-204ENST00000608957 LY6KQ17RY6 165 aa13.32□□□□□ -0.28
LINC00539-204ENST00000608957 NFXL1Q6ZNB6 911 aa13.32□□□□□ -0.28
LINC00539-204ENST00000608957 SEPT14Q6ZU15 432 aa13.32□□□□□ -0.28
LINC00539-204ENST00000608957 SGMS1Q86VZ5 419 aa13.32□□□□□ -0.28
LINC00539-204ENST00000608957 SCFD2Q8WU76 684 aa13.32□□□□□ -0.28
LINC00539-204ENST00000608957 PPP1R13LQ8WUF5 828 aa13.32□□□□□ -0.28
LINC00539-204ENST00000608957 ZFP91Q96JP5 570 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms