RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SPDYE1Q8NFV5 336 aaPredicted RBP22.31■■□□□ 1.16
UPF1-207ENST00000599848 TTC25Q96NG3 672 aa22.31■■□□□ 1.16
UPF1-207ENST00000599848 RNF181Q9P0P0 153 aa22.31■■□□□ 1.16
UPF1-207ENST00000599848 PSMC2P35998 433 aaKnown RBP22.31■■□□□ 1.16
UPF1-207ENST00000599848 NNMTP40261 264 aa22.31■■□□□ 1.16
UPF1-207ENST00000599848 DENND2CQ68D51 928 aa22.31■■□□□ 1.16
UPF1-207ENST00000599848 SLITRK6Q9H5Y7 841 aa22.31■■□□□ 1.16
UPF1-207ENST00000599848 SEPT6Q14141 434 aa22.31■■□□□ 1.16
UPF1-207ENST00000599848 DCAF4Q8WV16 495 aa22.31■■□□□ 1.16
UPF1-207ENST00000599848 ASAP1Q9ULH1 1129 aa22.31■■□□□ 1.16
UPF1-207ENST00000599848 ZKSCAN5Q9Y2L8 839 aa22.31■■□□□ 1.16
UPF1-207ENST00000599848 H2AFZP0C0S5 128 aa22.31■■□□□ 1.16
UPF1-207ENST00000599848 H2AFVQ71UI9 128 aa22.31■■□□□ 1.16
UPF1-207ENST00000599848 BZW1Q7L1Q6 419 aaKnown RBP22.31■■□□□ 1.16
UPF1-207ENST00000599848 GTF3C2Q8WUA4 911 aaPredicted RBP22.31■■□□□ 1.16
UPF1-207ENST00000599848 LCMT1Q9UIC8 334 aa22.31■■□□□ 1.16
UPF1-207ENST00000599848 IFNB1P01574 187 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 RASSF2P50749 326 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 SEPT10Q9P0V9 454 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 PCDHA4Q9UN74 947 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 PCDHB4Q9Y5E5 795 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 OVOS2A0A0G2JMS6 1433 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 OVOS2A0A0J9YW53 1432 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 OVOS2Q6IE36 1432 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 CAPN2P17655 700 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 OR8K1Q8NGG5 319 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 CCDC127Q96BQ5 260 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 UBXN2AP68543 259 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 RPF1Q9H9Y2 349 aaKnown RBP22.3■■□□□ 1.16
UPF1-207ENST00000599848 BSDC1Q9NW68 430 aaPredicted RBP22.3■■□□□ 1.16
UPF1-207ENST00000599848 PFKFB2O60825 505 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 PDXDC2PQ6P474 469 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 PHLDB2Q86SQ0 1253 aa22.3■■□□□ 1.16
UPF1-207ENST00000599848 IQCB1Q15051 598 aa22.29■■□□□ 1.16
UPF1-207ENST00000599848 LBHD1Q9BQE6 289 aaPredicted RBP22.29■■□□□ 1.16
UPF1-207ENST00000599848 EPHB1P54762 984 aa22.29■■□□□ 1.16
UPF1-207ENST00000599848 RSPH14Q9UHP6 348 aa22.29■■□□□ 1.16
UPF1-207ENST00000599848 FARP1Q9Y4F1 1045 aaPredicted RBP22.29■■□□□ 1.16
UPF1-207ENST00000599848 Q3C1V9 767 aa22.29■■□□□ 1.16
UPF1-207ENST00000599848 HSPD1P10809 573 aaKnown RBP22.28■■□□□ 1.16
UPF1-207ENST00000599848 STXBP2Q15833 593 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 CATSPER4Q7RTX7 472 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 IL17REQ8NFR9 667 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 FAM207AQ9NSI2 230 aaPredicted RBP22.28■■□□□ 1.16
UPF1-207ENST00000599848 USP17L5A8MUK1 530 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 RNF40O75150 1001 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 ARPP19P56211 112 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 USP17L2Q6R6M4 530 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 TTC39CQ8N584 583 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 SCYL1Q96KG9 808 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 MRPL47Q9HD33 250 aaKnown RBP22.28■■□□□ 1.16
UPF1-207ENST00000599848 DNMT1P26358 1616 aaKnown RBP22.28■■□□□ 1.16
UPF1-207ENST00000599848 PNMA6EA0A0J9YXQ4 647 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 MYO1FO00160 1098 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 AP3B2Q13367 1082 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 KRT33BQ14525 404 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 PSPC1Q8WXF1 523 aaKnown RBP22.28■■□□□ 1.16
UPF1-207ENST00000599848 H7C0C1 242 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 ATP5OP48047 213 aa22.28■■□□□ 1.16
UPF1-207ENST00000599848 MRRFQ96E11 262 aaKnown RBP22.28■■□□□ 1.16
UPF1-207ENST00000599848 VSIG1Q86XK7 387 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 SERTAD1Q9UHV2 236 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 ATP7BP35670 1465 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 KCNJ18B7U540 433 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 IGSF3O75054 1194 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 TSPY1Q01534 308 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 KCNJ12Q14500 433 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 NLRC4Q9NPP4 1024 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 FEM1BQ9UK73 627 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 KIF28PB7ZC32 967 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 RLBP1P12271 317 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 TSTA3Q13630 321 aaPredicted RBP22.27■■□□□ 1.16
UPF1-207ENST00000599848 EXOC3L4Q17RC7 722 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 PIDD1Q9HB75 910 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 PTPRTO14522 1441 aa22.27■■□□□ 1.16
UPF1-207ENST00000599848 SPICE1Q8N0Z3 855 aa22.27■■□□□ 1.15
UPF1-207ENST00000599848 UBN1Q9NPG3 1134 aa22.27■■□□□ 1.15
UPF1-207ENST00000599848 ZBBXA8MT70 800 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 ADCY8P40145 1251 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 PHKA1P46020 1223 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 SKIV2LQ15477 1246 aaKnown RBP22.26■■□□□ 1.15
UPF1-207ENST00000599848 RNF207Q6ZRF8 634 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 ZNF189O75820 626 aaPredicted RBP22.26■■□□□ 1.15
UPF1-207ENST00000599848 GOLGA8HP0CJ92 632 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 MID2Q9UJV3 735 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 PHKA2P46019 1235 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 TTLL4Q14679 1199 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 TSC1Q92574 1164 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 LARP4BQ92615 738 aaKnown RBP22.26■■□□□ 1.15
UPF1-207ENST00000599848 ERO1AQ96HE7 468 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 NARFQ9UHQ1 456 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 TRIM35Q9UPQ4 493 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 HEG1Q9ULI3 1381 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 SPDYE2BA6NHP3 402 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 SPDYE6P0CI01 402 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 MORC3Q14149 939 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 TTBK2Q6IQ55 1244 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 FOXP1Q9H334 677 aaPredicted RBP22.26■■□□□ 1.15
UPF1-207ENST00000599848 HOMER3Q9NSC5 361 aa22.26■■□□□ 1.15
UPF1-207ENST00000599848 KIAA1024Q9UPX6 916 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms