RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 USP14P54578 494 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 HMGCS2P54868 508 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 TMEM240Q5SV17 173 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 FAM83BQ5T0W9 1011 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 GPATCH4Q5T3I0 446 aaKnown RBP10.92□□□□□ -0.66
TRIM28-208ENST00000597172 RASIP1Q5U651 963 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 CCDC174Q6PII3 467 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 BTNL9Q6UXG8 535 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 PLEKHH3Q7Z736 793 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 HLA-CQ95604 372 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 DDX11Q96FC9 970 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 C12orf42Q96LP6 360 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 FEZ1Q99689 392 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 LZTS2Q9BRK4 669 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 RIOX1Q9H6W3 641 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 DAXXQ9UER7 740 aaPredicted RBP10.92□□□□□ -0.66
TRIM28-208ENST00000597172 SMC3Q9UQE7 1217 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 V9GY48 417 aaPredicted RBP10.92□□□□□ -0.66
TRIM28-208ENST00000597172 PHIPQ8WWQ0 1821 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 MYH4Q9Y623 1939 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 CNTNAP5Q8WYK1 1306 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 C5orf42Q9H799 3197 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 hCG_1642624A0A1W2PR95 340 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 TMEM232C9JQI7 657 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 PRPF3O43395 683 aaKnown RBP10.91□□□□□ -0.66
TRIM28-208ENST00000597172 GTPBP6O43824 516 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-208ENST00000597172 HSP90AA1P07900 732 aaKnown RBP10.91□□□□□ -0.66
TRIM28-208ENST00000597172 SSRP1Q08945 709 aaKnown RBP10.91□□□□□ -0.66
TRIM28-208ENST00000597172 MAP2K5Q13163 448 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 PKN1Q16512 942 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 CCDC96Q2M329 555 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 GPR142Q7Z601 462 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 GJD3Q8N144 294 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 SPZ1Q9BXG8 430 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 SLC26A6Q9BXS9 759 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 JMJD4Q9H9V9 463 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 CWC22Q9HCG8 908 aaKnown RBP10.91□□□□□ -0.66
TRIM28-208ENST00000597172 FLRT1Q9NZU1 646 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 ORC3Q9UBD5 711 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-208ENST00000597172 GVINP1Q7Z2Y8 2422 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 CHD6Q8TD26 2715 aa10.91□□□□□ -0.66
TRIM28-208ENST00000597172 WDR46O15213 610 aaKnown RBP10.9□□□□□ -0.66
TRIM28-208ENST00000597172 PLA2G6O60733 806 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 CDKL5O76039 1030 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 VCAM1P19320 739 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 IRX3P78415 501 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-208ENST00000597172 HMGN5P82970 282 aaKnown RBP10.9□□□□□ -0.66
TRIM28-208ENST00000597172 CPLX2Q6PUV4 134 aaKnown RBP10.9□□□□□ -0.66
TRIM28-208ENST00000597172 C16orf59Q7L2K0 433 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 ERMP1Q7Z2K6 904 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 ADGRF4Q8IZF3 695 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 TRPV1Q8NER1 839 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 MTMR8Q96EF0 704 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 AIFM3Q96NN9 605 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 RNF26Q9BY78 433 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-208ENST00000597172 PORCNQ9H237 461 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 RPAP3Q9H6T3 665 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-208ENST00000597172 VAT1LQ9HCJ6 419 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 TXNRD2Q9NNW7 524 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 FBXO28Q9NVF7 368 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 MTCH2Q9Y6C9 303 aa10.9□□□□□ -0.66
TRIM28-208ENST00000597172 STK36Q9NRP7 1315 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 GFRA3O60609 400 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 PQBP1O60828 265 aaKnown RBP10.89□□□□□ -0.67
TRIM28-208ENST00000597172 KRT37O76014 449 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 POU3F3P20264 500 aaPredicted RBP10.89□□□□□ -0.67
TRIM28-208ENST00000597172 CYP2C19P33261 490 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 PPIGQ13427 754 aaKnown RBP eCLIP10.89□□□□□ -0.671e-19■□□□□ 10.9
TRIM28-208ENST00000597172 Q3C1V9 767 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 SYDE2Q5VT97 1194 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 ANO1Q5XXA6 986 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 CATSPERGQ6ZRH7 1159 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 PIBF1Q8WXW3 757 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 PIGSQ96S52 555 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 GJB4Q9NTQ9 266 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 TMOD4Q9NZQ9 345 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 FEM1BQ9UK73 627 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 PRR12Q9ULL5 1215 aa10.89□□□□□ -0.67
TRIM28-208ENST00000597172 YBX2Q9Y2T7 364 aaKnown RBP10.89□□□□□ -0.67
TRIM28-208ENST00000597172 KMT2BQ9UMN6 2715 aaPredicted RBP10.88□□□□□ -0.67
TRIM28-208ENST00000597172 DEXIO95424 95 aa10.88□□□□□ -0.67
TRIM28-208ENST00000597172 TIMP1P01033 207 aa10.88□□□□□ -0.67
TRIM28-208ENST00000597172 SYT1P21579 422 aa10.88□□□□□ -0.67
TRIM28-208ENST00000597172 SSTR3P32745 418 aaPredicted RBP10.88□□□□□ -0.67
TRIM28-208ENST00000597172 STAT2P52630 851 aa10.88□□□□□ -0.67
TRIM28-208ENST00000597172 SNAP25P60880 206 aa10.88□□□□□ -0.67
TRIM28-208ENST00000597172 LRRC41Q15345 812 aa10.88□□□□□ -0.67
TRIM28-208ENST00000597172 PFKFB3Q16875 520 aaPredicted RBP10.88□□□□□ -0.67
TRIM28-208ENST00000597172 LARP1BQ659C4 914 aaKnown RBP10.88□□□□□ -0.67
TRIM28-208ENST00000597172 PPP2R2DQ66LE6 453 aa10.88□□□□□ -0.67
TRIM28-208ENST00000597172 ZNF365Q70YC5 407 aa10.88□□□□□ -0.67
TRIM28-208ENST00000597172 FAM160B2Q86V87 743 aa10.88□□□□□ -0.67
TRIM28-208ENST00000597172 TRIM22Q8IYM9 498 aa10.88□□□□□ -0.67
TRIM28-208ENST00000597172 CHURC1Q8WUH1 139 aa10.88□□□□□ -0.67
TRIM28-208ENST00000597172 RBPJLQ9UBG7 517 aa10.88□□□□□ -0.67
TRIM28-208ENST00000597172 ISY1Q9ULR0 285 aaKnown RBP10.88□□□□□ -0.67
TRIM28-208ENST00000597172 ANKRD11Q6UB99 2663 aaPredicted RBP10.88□□□□□ -0.67
TRIM28-208ENST00000597172 PNMA6FA0A0J9YX94 578 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 USP17L15C9J2P7 530 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 USP17L13C9JLJ4 530 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms