RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 KRT32Q14532 448 aa17.52■□□□□ 0.4
TRIM28-205ENST00000595028 KCNA10Q16322 511 aa17.52■□□□□ 0.4
TRIM28-205ENST00000595028 SGMS1Q86VZ5 419 aa17.52■□□□□ 0.4
TRIM28-205ENST00000595028 PCSK9Q8NBP7 692 aaKnown RBP17.52■□□□□ 0.4
TRIM28-205ENST00000595028 SPZ1Q9BXG8 430 aa17.52■□□□□ 0.4
TRIM28-205ENST00000595028 SEMA6BQ9H3T3 888 aa17.52■□□□□ 0.4
TRIM28-205ENST00000595028 RAPGEFL1Q9UHV5 662 aa17.52■□□□□ 0.4
TRIM28-205ENST00000595028 PCDHA1Q9Y5I3 950 aa17.52■□□□□ 0.4
TRIM28-205ENST00000595028 PNMA6FA0A0J9YX94 578 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 RBM47A0AV96 593 aaKnown RBP17.51■□□□□ 0.39
TRIM28-205ENST00000595028 B4DLN1 442 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 CALM1P0DP23 149 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 CALM2P0DP24 149 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 CALM3P0DP25 149 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 RXRAP19793 462 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 PTGS1P23219 599 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 HSD17B4P51659 736 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 MRPL12P52815 198 aaKnown RBP17.51■□□□□ 0.39
TRIM28-205ENST00000595028 ADCK5Q3MIX3 580 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 DUSP28Q4G0W2 176 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 GNASQ5JWF2 1037 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 IQSEC1Q6DN90 963 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 MYLIPQ8WY64 445 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 LBHD1Q9BQE6 289 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-205ENST00000595028 LZTS2Q9BRK4 669 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 STARD7Q9NQZ5 370 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 SLC12A7Q9Y666 1083 aa17.51■□□□□ 0.39
TRIM28-205ENST00000595028 REC8O95072 547 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 PLEKHA8P1O95397 391 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 CFBP00751 764 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 ASGR1P07306 291 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 SMARCA1P28370 1054 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 GNAQP50148 359 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 EXOSC10Q01780 885 aaKnown RBP17.5■□□□□ 0.39
TRIM28-205ENST00000595028 FSCN1Q16658 493 aaKnown RBP17.5■□□□□ 0.39
TRIM28-205ENST00000595028 TMEM63BQ5T3F8 832 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 DHX32Q7L7V1 743 aaKnown RBP17.5■□□□□ 0.39
TRIM28-205ENST00000595028 NSUN6Q8TEA1 469 aaKnown RBP17.5■□□□□ 0.39
TRIM28-205ENST00000595028 KCNB2Q92953 911 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 TCEANC2Q96MN5 208 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 GLT1D1Q96MS3 346 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 TAAR1Q96RJ0 339 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 RMDN3Q96TC7 470 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 PDLIM7Q9NR12 457 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 Q9Y3F1 56 aa17.5■□□□□ 0.39
TRIM28-205ENST00000595028 ELP1O95163 1332 aa17.49■□□□□ 0.39
TRIM28-205ENST00000595028 HSPA4P34932 840 aa17.49■□□□□ 0.39
TRIM28-205ENST00000595028 BEX3Q00994 111 aa17.49■□□□□ 0.39
TRIM28-205ENST00000595028 MICU3Q86XE3 530 aa17.49■□□□□ 0.39
TRIM28-205ENST00000595028 RAB11FIP4Q86YS3 637 aa17.49■□□□□ 0.39
TRIM28-205ENST00000595028 SCFD2Q8WU76 684 aa17.49■□□□□ 0.39
TRIM28-205ENST00000595028 WDR11Q9BZH6 1224 aa17.49■□□□□ 0.39
TRIM28-205ENST00000595028 AP5M1Q9H0R1 490 aa17.49■□□□□ 0.39
TRIM28-205ENST00000595028 MAP3K20Q9NYL2 800 aaKnown RBP17.49■□□□□ 0.39
TRIM28-205ENST00000595028 PRKAG2Q9UGJ0 569 aa17.49■□□□□ 0.39
TRIM28-205ENST00000595028 DYNC1LI2O43237 492 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-205ENST00000595028 TLE2Q04725 743 aa17.48■□□□□ 0.39
TRIM28-205ENST00000595028 PPP2R5BQ15173 497 aa17.48■□□□□ 0.39
TRIM28-205ENST00000595028 APOA5Q6Q788 366 aa17.48■□□□□ 0.39
TRIM28-205ENST00000595028 SAMD3Q8N6K7 520 aa17.48■□□□□ 0.39
TRIM28-205ENST00000595028 PIBF1Q8WXW3 757 aa17.48■□□□□ 0.39
TRIM28-205ENST00000595028 RRP36Q96EU6 259 aaKnown RBP17.48■□□□□ 0.39
TRIM28-205ENST00000595028 IWS1Q96ST2 819 aa17.48■□□□□ 0.39
TRIM28-205ENST00000595028 TTYH1Q9H313 450 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-205ENST00000595028 PRDM5Q9NQX1 630 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-205ENST00000595028 PXMP2Q9NR77 195 aa17.48■□□□□ 0.39
TRIM28-205ENST00000595028 SEC63Q9UGP8 760 aaKnown RBP17.48■□□□□ 0.39
TRIM28-205ENST00000595028 A0A0U1RQG5 324 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-205ENST00000595028 NKRFO15226 690 aaKnown RBP eCLIP17.47■□□□□ 0.39
TRIM28-205ENST00000595028 PQBP1O60828 265 aaKnown RBP17.47■□□□□ 0.39
TRIM28-205ENST00000595028 HMGB1P09429 215 aaKnown RBP17.47■□□□□ 0.39
TRIM28-205ENST00000595028 EIF2AK2P19525 551 aaKnown RBP17.47■□□□□ 0.39
TRIM28-205ENST00000595028 HOXA13P31271 388 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-205ENST00000595028 ARHGEF16Q5VV41 709 aa17.47■□□□□ 0.39
TRIM28-205ENST00000595028 TMTC3Q6ZXV5 915 aa17.47■□□□□ 0.39
TRIM28-205ENST00000595028 SRBD1Q8N5C6 995 aaKnown RBP17.47■□□□□ 0.39
TRIM28-205ENST00000595028 SNX14Q9Y5W7 946 aa17.47■□□□□ 0.39
TRIM28-205ENST00000595028 GCOM1H8Y6P7 765 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-205ENST00000595028 TNFRSF10AO00220 468 aa17.46■□□□□ 0.39
TRIM28-205ENST00000595028 EPB41L2O43491 1005 aaKnown RBP17.46■□□□□ 0.39
TRIM28-205ENST00000595028 ZEB2O60315 1214 aa17.46■□□□□ 0.39
TRIM28-205ENST00000595028 CLTBP09497 229 aa17.46■□□□□ 0.39
TRIM28-205ENST00000595028 POLR2MP0CAP2 368 aa17.46■□□□□ 0.39
TRIM28-205ENST00000595028 FOSL2P15408 326 aa17.46■□□□□ 0.39
TRIM28-205ENST00000595028 TTLL4Q14679 1199 aa17.46■□□□□ 0.39
TRIM28-205ENST00000595028 SHHQ15465 462 aa17.46■□□□□ 0.39
TRIM28-205ENST00000595028 STXBP2Q15833 593 aa17.46■□□□□ 0.39
TRIM28-205ENST00000595028 CXCL17Q6UXB2 119 aa17.46■□□□□ 0.39
TRIM28-205ENST00000595028 SYNE3Q6ZMZ3 975 aa17.46■□□□□ 0.39
TRIM28-205ENST00000595028 ANKRD33Q7Z3H0 272 aa17.46■□□□□ 0.39
TRIM28-205ENST00000595028 CMTR1Q8N1G2 835 aaKnown RBP17.46■□□□□ 0.39
TRIM28-205ENST00000595028 FANCBQ8NB91 859 aa17.46■□□□□ 0.39
TRIM28-205ENST00000595028 JAKMIP1Q96N16 626 aaKnown RBP17.46■□□□□ 0.39
TRIM28-205ENST00000595028 SCN10AQ9Y5Y9 1956 aa17.46■□□□□ 0.39
TRIM28-205ENST00000595028 MROH7Q68CQ1 1323 aa17.46■□□□□ 0.38
TRIM28-205ENST00000595028 CABYRO75952 493 aa17.45■□□□□ 0.38
TRIM28-205ENST00000595028 ARIH2O95376 493 aa17.45■□□□□ 0.38
TRIM28-205ENST00000595028 NR3C2P08235 984 aa17.45■□□□□ 0.38
TRIM28-205ENST00000595028 SH3RF1Q7Z6J0 888 aa17.45■□□□□ 0.38
TRIM28-205ENST00000595028 OR6J1Q8NGC5 347 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms