RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 A0A0U1RQJ8 604 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 ELF3P78545 371 aaPredicted RBP13.47□□□□□ -0.25
LIG1-207ENST00000594759 ZBED6P86452 979 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 CCDC92Q53HC0 331 aaPredicted RBP13.47□□□□□ -0.25
LIG1-207ENST00000594759 CFAP157Q5JU67 520 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 CCDC84Q86UT8 332 aaPredicted RBP13.47□□□□□ -0.25
LIG1-207ENST00000594759 MYLK4Q86YV6 388 aaPredicted RBP13.47□□□□□ -0.25
LIG1-207ENST00000594759 KIF2BQ8N4N8 673 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 CSRNP2Q9H175 543 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 RHBDL2Q9NX52 303 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 SERPINA10Q9UK55 444 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 NIP7Q9Y221 180 aaKnown RBP eCLIP13.47□□□□□ -0.25
LIG1-207ENST00000594759 ZNF652Q9Y2D9 606 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 PIK3C2BO00750 1634 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 ADGRL3Q9HAR2 1447 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 CALCOCO2Q13137 446 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 WLSQ5T9L3 541 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 MFSD6Q6ZSS7 791 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 KIAA0825Q8IV33 1275 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 FAM81AQ8TBF8 368 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 NUDCD1Q96RS6 583 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 STOML1Q9UBI4 398 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 PCDHA13Q9Y5I0 950 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 CCDC194A0A1B0GVG4 234 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 FTCDO95954 541 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 MCM7P33993 719 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 PSMC4P43686 418 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 TBX2Q13207 712 aaPredicted RBP13.46□□□□□ -0.25
LIG1-207ENST00000594759 TCP11X2Q5H9J9 407 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 DZIP1Q86YF9 867 aaKnown RBP13.46□□□□□ -0.25
LIG1-207ENST00000594759 SMC6Q96SB8 1091 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 NLRC4Q9NPP4 1024 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 TFR2Q9UP52 801 aa13.46□□□□□ -0.25
LIG1-207ENST00000594759 CNGA1P29973 690 aa13.46□□□□□ -0.26
LIG1-207ENST00000594759 EZH2Q15910 746 aaKnown RBP13.46□□□□□ -0.26
LIG1-207ENST00000594759 MAP7D1Q3KQU3 841 aa13.46□□□□□ -0.26
LIG1-207ENST00000594759 TSGA10IPQ3SY00 556 aa13.46□□□□□ -0.26
LIG1-207ENST00000594759 ARHGAP18Q8N392 663 aa13.46□□□□□ -0.26
LIG1-207ENST00000594759 OR2W6PQ8NHA6 318 aa13.46□□□□□ -0.26
LIG1-207ENST00000594759 PLBD2Q8NHP8 589 aa13.46□□□□□ -0.26
LIG1-207ENST00000594759 CENPKQ9BS16 269 aa13.46□□□□□ -0.26
LIG1-207ENST00000594759 TUBGCP2Q9BSJ2 902 aa13.46□□□□□ -0.26
LIG1-207ENST00000594759 KDM4CQ9H3R0 1056 aa13.46□□□□□ -0.26
LIG1-207ENST00000594759 MLXIPQ9HAP2 919 aa13.46□□□□□ -0.26
LIG1-207ENST00000594759 LMTK3Q96Q04 1460 aa13.46□□□□□ -0.26
LIG1-207ENST00000594759 IGF2BP3O00425 579 aaKnown RBP eCLIP13.45□□□□□ -0.26
LIG1-207ENST00000594759 IL15P40933 162 aaPredicted RBP13.45□□□□□ -0.26
LIG1-207ENST00000594759 EIF3BP55884 814 aaKnown RBP13.45□□□□□ -0.26
LIG1-207ENST00000594759 CUL1Q13616 776 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 CCDC24Q8N4L8 307 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 RETREG2Q8NC44 543 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 FAF1Q9UNN5 650 aaPredicted RBP13.45□□□□□ -0.26
LIG1-207ENST00000594759 MROH7-TTC4A0A0A0MT08 1334 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 NEURL1BA8MQ27 555 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 ADGRB1O14514 1584 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 IRS4O14654 1257 aaPredicted RBP13.45□□□□□ -0.26
LIG1-207ENST00000594759 KRT2P35908 639 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 MSH2P43246 934 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 CCDC65Q8IXS2 484 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 CMTR1Q8N1G2 835 aaKnown RBP13.45□□□□□ -0.26
LIG1-207ENST00000594759 SMCR8Q8TEV9 937 aaPredicted RBP13.45□□□□□ -0.26
LIG1-207ENST00000594759 KCNB2Q92953 911 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 FERMT2Q96AC1 680 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 IQCDQ96DY2 449 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 FRMPD1Q5SYB0 1578 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 ATP4AP20648 1035 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 DEUP1Q05D60 604 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 PEX26Q7Z412 305 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 MB21D1Q8N884 522 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 MAGEC3Q8TD91 643 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 RMI1Q9H9A7 625 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 SMARCAL1Q9NZC9 954 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 ATXN2Q99700 1313 aaKnown RBP13.45□□□□□ -0.26
LIG1-207ENST00000594759 NCK2O43639 380 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 TOM1O60784 492 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 CIB2O75838 187 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 BAG2O95816 211 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 FGAP02671 866 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 SLCO1A2P46721 670 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 SERPINB4P48594 390 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 PDE1CQ14123 709 aaPredicted RBP13.45□□□□□ -0.26
LIG1-207ENST00000594759 CCDC152Q4G0S7 254 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 TTMPQ5BVD1 217 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 ARMCX6Q7L4S7 300 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 MAEAQ7L5Y9 396 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 APLFQ8IW19 511 aaPredicted RBP13.45□□□□□ -0.26
LIG1-207ENST00000594759 LRRC8CQ8TDW0 803 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 MAIP1Q8WWC4 291 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 CEP63Q96MT8 703 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 HAUS7Q99871 368 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 GGA2Q9UJY4 613 aa13.45□□□□□ -0.26
LIG1-207ENST00000594759 EME2A4GXA9 379 aaPredicted RBP13.44□□□□□ -0.26
LIG1-207ENST00000594759 RASSF9O75901 435 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 ABCD1P33897 745 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 ERVK-24P63145 666 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 ARHGAP24Q8N264 748 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 RAPGEF5Q92565 580 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 XPO6Q96QU8 1125 aaKnown RBP13.44□□□□□ -0.26
LIG1-207ENST00000594759 SH3GL2Q99962 352 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 IQCGQ9H095 443 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms