RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	CCDC197	Q8NCU1	140 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	FAM212A	Q96EL1	285 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	SCLT1	Q96NL6	688 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	DNAJC7	Q99615	494 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	PHF20	Q9BVI0	1012 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	MXD3	Q9BW11	206 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	PUS3	Q9BZE2	481 aa	Known RBP	3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	MRPL44	Q9H9J2	332 aa	Known RBP	3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	ZNF446	Q9NWS9	450 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	CEP72	Q9P209	647 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	GGA2	Q9UJY4	613 aa		3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	CTDP1	Q9Y5B0	961 aa	Predicted RBP	3.89	□□□□□ -1.79
VMP1-216	ENST00000592790	LMO7	Q8WWI1	1683 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	ATRN	O75882	1429 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	PRAMEF22	A3QJZ6	481 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	MEFV	O15553	781 aa	Predicted RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	ORC4	O43929	436 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	CEP104	O60308	925 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	ZMYND10	O75800	440 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	CSF1R	P07333	972 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	DES	P17661	470 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	LMNB1	P20700	586 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	HPD	P32754	393 aa	Predicted RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	GUCY2D	Q02846	1103 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	NR5A1	Q13285	461 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	CHRNA2	Q15822	529 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	RAD9B	Q6WBX8	426 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	BBOF1	Q8ND07	529 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	SYN2	Q92777	582 aa	Predicted RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	SELENOS	Q9BQE4	189 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	SPZ1	Q9BXG8	430 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	NDST4	Q9H3R1	872 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	ZCCHC17	Q9NP64	241 aa	Known RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	ANAPC4	Q9UJX5	808 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	NIP7	Q9Y221	180 aa	Known RBP eCLIP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	NEDD4	P46934	1319 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	CFAP73	A6NFT4	308 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	LRRC10B	A6NIK2	292 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	KRIT1	O00522	736 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	TEX33	O43247	280 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	N4BP1	O75113	896 aa	Known RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	ZPR1	O75312	459 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	GFPT2	O94808	682 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	RHOBTB3	O94955	611 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	GYPC	P04921	128 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	H2AFZ	P0C0S5	128 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	PRR29	P0C7W0	189 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	NEFH	P12036	1026 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	FER	P16591	822 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	HIBADH	P31937	336 aa	Known RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	PHKA1	P46020	1223 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	DNA2	P51530	1060 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	FMR1	Q06787	632 aa	Known RBP eCLIP	3.88	□□□□□ -1.79	2e-9	■■□□□ 12.8
VMP1-216	ENST00000592790	TSNAXIP1	Q2TAA8	658 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	UNC13D	Q70J99	1090 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	H2AFV	Q71UI9	128 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	NLRP10	Q86W26	655 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	SLFN12	Q8IYM2	578 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	ADSSL1	Q8N142	457 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	TTLL11	Q8NHH1	800 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	SNX29	Q8TEQ0	813 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	EPSTI1	Q96J88	318 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	ORAI2	Q96SN7	254 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	OSBPL9	Q96SU4	736 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	FAM129A	Q9BZQ8	928 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	EPN3	Q9H201	632 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	SLITRK6	Q9H5Y7	841 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	FAM207A	Q9NSI2	230 aa	Predicted RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	TYW1	Q9NV66	732 aa	Known RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	MAPK8IP1	Q9UQF2	711 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	FRMD4B	Q9Y2L6	1034 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	COL4A3BP	Q9Y5P4	624 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	NFAT5	O94916	1531 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	NRXN3	Q9Y4C0	1643 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	PIK3C2A	O00443	1686 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	KIF1A	Q12756	1690 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	TTC26	A0AVF1	554 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	ENC1	O14682	589 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	FOXP2	O15409	715 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	RGS16	O15492	202 aa	Predicted RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	EVI5	O60447	810 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	BCR	P11274	1271 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	TNFRSF8	P28908	595 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	CDC37	Q16543	378 aa	Predicted RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	ZFYVE27	Q5T4F4	411 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	NBPF10	Q6P3W6	841 aa	Known RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	INTS8	Q75QN2	995 aa	Known RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	GRAMD1C	Q8IYS0	662 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	GUF1	Q8N442	669 aa	Known RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	PNMA1	Q8ND90	353 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	GRK7	Q8WTQ7	553 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	LARP4B	Q92615	738 aa	Known RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	ATP6V1G3	Q96LB4	118 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	AIFM3	Q96NN9	605 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	ERGIC2	Q96RQ1	377 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	LSM14B	Q9BX40	385 aa	Known RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	MOV10L1	Q9BXT6	1211 aa	Known RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	GREM2	Q9H772	168 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	EPB41L5	Q9HCM4	733 aa		3.88	□□□□□ -1.79

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