RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 IKQ13123 557 aaPredicted RBP13.09□□□□□ -0.31
ZNF540-209ENST00000590588 PWP2Q15269 919 aaKnown RBP13.09□□□□□ -0.31
ZNF540-209ENST00000590588 UBE3CQ15386 1083 aa13.09□□□□□ -0.31
ZNF540-209ENST00000590588 HSP90AB4PQ58FF6 505 aa13.09□□□□□ -0.31
ZNF540-209ENST00000590588 FAM117BQ6P1L5 589 aa13.09□□□□□ -0.31
ZNF540-209ENST00000590588 STK11IPQ8N1F8 1099 aa13.09□□□□□ -0.31
ZNF540-209ENST00000590588 LRRC47Q8N1G4 583 aaKnown RBP13.09□□□□□ -0.31
ZNF540-209ENST00000590588 PBXIP1Q96AQ6 731 aa13.09□□□□□ -0.31
ZNF540-209ENST00000590588 CEP95Q96GE4 821 aa13.09□□□□□ -0.31
ZNF540-209ENST00000590588 IRF2BPLQ9H1B7 796 aa13.09□□□□□ -0.31
ZNF540-209ENST00000590588 ZNF287Q9HBT7 754 aa13.09□□□□□ -0.31
ZNF540-209ENST00000590588 IL1RAPL2Q9NP60 686 aa13.09□□□□□ -0.31
ZNF540-209ENST00000590588 PAG1Q9NWQ8 432 aa13.09□□□□□ -0.31
ZNF540-209ENST00000590588 ISY1Q9ULR0 285 aaKnown RBP13.09□□□□□ -0.31
ZNF540-209ENST00000590588 EXOC6BQ9Y2D4 811 aa13.09□□□□□ -0.31
ZNF540-209ENST00000590588 PLA2G6O60733 806 aa13.08□□□□□ -0.32
ZNF540-209ENST00000590588 NBNO60934 754 aa13.08□□□□□ -0.32
ZNF540-209ENST00000590588 TCF15Q12870 199 aa13.08□□□□□ -0.32
ZNF540-209ENST00000590588 COL19A1Q14993 1142 aa13.08□□□□□ -0.32
ZNF540-209ENST00000590588 SMAD2Q15796 467 aaKnown RBP13.08□□□□□ -0.32
ZNF540-209ENST00000590588 EPC2Q52LR7 807 aa13.08□□□□□ -0.32
ZNF540-209ENST00000590588 TCEAL5Q5H9L2 206 aa13.08□□□□□ -0.32
ZNF540-209ENST00000590588 MUM1L1Q5H9M0 696 aa13.08□□□□□ -0.32
ZNF540-209ENST00000590588 NSMFQ6X4W1 530 aa13.08□□□□□ -0.32
ZNF540-209ENST00000590588 RNF135Q8IUD6 432 aa13.08□□□□□ -0.32
ZNF540-209ENST00000590588 SUGP1Q8IWZ8 645 aaKnown RBP13.08□□□□□ -0.32
ZNF540-209ENST00000590588 CLASRPQ8N2M8 674 aaKnown RBP13.08□□□□□ -0.32
ZNF540-209ENST00000590588 PURBQ96QR8 312 aaKnown RBP13.08□□□□□ -0.32
ZNF540-209ENST00000590588 NSUN3Q9H649 340 aaKnown RBP13.08□□□□□ -0.32
ZNF540-209ENST00000590588 CLDND1Q9NY35 253 aa13.08□□□□□ -0.32
ZNF540-209ENST00000590588 GTF3C3Q9Y5Q9 886 aa13.08□□□□□ -0.32
ZNF540-209ENST00000590588 MINDY4BA8MYZ0 360 aa13.07□□□□□ -0.32
ZNF540-209ENST00000590588 H3BNC9 293 aa13.07□□□□□ -0.32
ZNF540-209ENST00000590588 CKBP12277 381 aa13.07□□□□□ -0.32
ZNF540-209ENST00000590588 SLC1A4P43007 532 aa13.07□□□□□ -0.32
ZNF540-209ENST00000590588 ALDH5A1P51649 535 aaPredicted RBP13.07□□□□□ -0.32
ZNF540-209ENST00000590588 CHMP4BP1P59074 171 aa13.07□□□□□ -0.32
ZNF540-209ENST00000590588 RBL2Q08999 1139 aa13.07□□□□□ -0.32
ZNF540-209ENST00000590588 GPM6BQ13491 265 aa13.07□□□□□ -0.32
ZNF540-209ENST00000590588 PPP2R5BQ15173 497 aa13.07□□□□□ -0.32
ZNF540-209ENST00000590588 SESTD1Q86VW0 696 aa13.07□□□□□ -0.32
ZNF540-209ENST00000590588 RHPN1Q8TCX5 695 aa13.07□□□□□ -0.32
ZNF540-209ENST00000590588 TRIOO75962 3097 aa13.07□□□□□ -0.32
ZNF540-209ENST00000590588 PTPRSQ13332 1948 aa13.07□□□□□ -0.32
ZNF540-209ENST00000590588 SCN10AQ9Y5Y9 1956 aa13.07□□□□□ -0.32
ZNF540-209ENST00000590588 TANC1Q9C0D5 1861 aa13.06□□□□□ -0.32
ZNF540-209ENST00000590588 GREB1LQ9C091 1923 aaPredicted RBP13.06□□□□□ -0.32
ZNF540-209ENST00000590588 TMEM221A6NGB7 291 aa13.06□□□□□ -0.32
ZNF540-209ENST00000590588 M0R296 226 aa13.06□□□□□ -0.32
ZNF540-209ENST00000590588 IFIT2P09913 472 aaKnown RBP13.06□□□□□ -0.32
ZNF540-209ENST00000590588 HTRA4P83105 476 aaPredicted RBP13.06□□□□□ -0.32
ZNF540-209ENST00000590588 BAATQ14032 418 aaPredicted RBP13.06□□□□□ -0.32
ZNF540-209ENST00000590588 TCTN1Q2MV58 587 aa13.06□□□□□ -0.32
ZNF540-209ENST00000590588 GDF6Q6KF10 455 aaPredicted RBP13.06□□□□□ -0.32
ZNF540-209ENST00000590588 ZSCAN25Q6NSZ9 544 aa13.06□□□□□ -0.32
ZNF540-209ENST00000590588 GIMAP6Q6P9H5 292 aa13.06□□□□□ -0.32
ZNF540-209ENST00000590588 TRIM67Q6ZTA4 783 aa13.06□□□□□ -0.32
ZNF540-209ENST00000590588 SP7Q8TDD2 431 aaPredicted RBP13.06□□□□□ -0.32
ZNF540-209ENST00000590588 SCFD2Q8WU76 684 aa13.06□□□□□ -0.32
ZNF540-209ENST00000590588 GMCL1Q96IK5 515 aa13.06□□□□□ -0.32
ZNF540-209ENST00000590588 PUS7LQ9H0K6 701 aaKnown RBP13.06□□□□□ -0.32
ZNF540-209ENST00000590588 SIP14410 1827 aa13.06□□□□□ -0.32
ZNF540-209ENST00000590588 TRIP12Q14669 1992 aaPredicted RBP13.05□□□□□ -0.32
ZNF540-209ENST00000590588 C5orf42Q9H799 3197 aa13.05□□□□□ -0.32
ZNF540-209ENST00000590588 MBTPS2O43462 519 aa13.05□□□□□ -0.32
ZNF540-209ENST00000590588 AMHP03971 560 aa13.05□□□□□ -0.32
ZNF540-209ENST00000590588 MCCP23508 829 aa13.05□□□□□ -0.32
ZNF540-209ENST00000590588 LTBRP36941 435 aa13.05□□□□□ -0.32
ZNF540-209ENST00000590588 ZKSCAN2Q63HK3 967 aa13.05□□□□□ -0.32
ZNF540-209ENST00000590588 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.05□□□□□ -0.32
ZNF540-209ENST00000590588 RPAINQ86UA6 219 aa13.05□□□□□ -0.32
ZNF540-209ENST00000590588 CTAGE1Q96RT6 745 aa13.05□□□□□ -0.32
ZNF540-209ENST00000590588 MPHOSPH6Q99547 160 aaKnown RBP13.05□□□□□ -0.32
ZNF540-209ENST00000590588 BOLA2Q9H3K6 86 aa13.05□□□□□ -0.32
ZNF540-209ENST00000590588 CCPG1Q9ULG6 757 aa13.05□□□□□ -0.32
ZNF540-209ENST00000590588 STXBP3O00186 592 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 CHGBP05060 677 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 TXNP10599 105 aaKnown RBP13.04□□□□□ -0.32
ZNF540-209ENST00000590588 SNAP25P60880 206 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 PDE4DQ08499 809 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 CTC1Q2NKJ3 1217 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 RCSD1Q6JBY9 416 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 CEP85Q6P2H3 762 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 ERMP1Q7Z2K6 904 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 TMEM192Q8IY95 271 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 MYOCDQ8IZQ8 938 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 FBXL6Q8N531 539 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 DHX38Q92620 1227 aaKnown RBP13.04□□□□□ -0.32
ZNF540-209ENST00000590588 ATOH1Q92858 354 aaPredicted RBP13.04□□□□□ -0.32
ZNF540-209ENST00000590588 COPS5Q92905 334 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 KIF1BPQ96EK5 621 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 STRBPQ96SI9 672 aaKnown RBP13.04□□□□□ -0.32
ZNF540-209ENST00000590588 PRR12Q9ULL5 1215 aa13.04□□□□□ -0.32
ZNF540-209ENST00000590588 TECTAO75443 2155 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 PTPDC1A2A3K4 754 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 GSG1L2A8MUP6 293 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 LGR5O75473 907 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 PRDM1O75626 825 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 ICAM1P05362 532 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 TSPY3P0CV98 308 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms