RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 USP2O75604 605 aaPredicted RBP7.01□□□□□ -1.29
LIG3-206ENST00000586058 ALAS1P13196 640 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 PFKFB1P16118 471 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 OSBPP22059 807 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 COPB2P35606 906 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 ZNF445P59923 1031 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 JAG1P78504 1218 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 SETQ01105 290 aaPredicted RBP7.01□□□□□ -1.29
LIG3-206ENST00000586058 PTGDRQ13258 359 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 PPIL2Q13356 520 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 PTPAQ15257 358 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 ZNF174Q15697 407 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 CALCRLQ16602 461 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 UBE2SQ16763 222 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 TMEM132AQ24JP5 1023 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 TKFCQ3LXA3 575 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 TYW1BQ6NUM6 668 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 MOXD1Q6UVY6 613 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 LRSAM1Q6UWE0 723 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 CCDC84Q86UT8 332 aaPredicted RBP7.01□□□□□ -1.29
LIG3-206ENST00000586058 SIAH1Q8IUQ4 282 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 SLFN12Q8IYM2 578 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 CPXCR1Q8N123 301 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 MB21D1Q8N884 522 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 CNNM3Q8NE01 707 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 FBXO22Q8NEZ5 403 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 ERMNQ8TAM6 284 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 GTF3C2Q8WUA4 911 aaPredicted RBP7.01□□□□□ -1.29
LIG3-206ENST00000586058 CCDC47Q96A33 483 aaKnown RBP7.01□□□□□ -1.29
LIG3-206ENST00000586058 CALML4Q96GE6 196 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 AK8Q96MA6 479 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 MAF1Q9H063 256 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 NAT10Q9H0A0 1025 aaKnown RBP7.01□□□□□ -1.29
LIG3-206ENST00000586058 CLSTN2Q9H4D0 955 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 HOXC10Q9NYD6 342 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 TMEM63CQ9P1W3 806 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 DDX25Q9UHL0 483 aaKnown RBP7.01□□□□□ -1.29
LIG3-206ENST00000586058 SRPRBQ9Y5M8 271 aaKnown RBP7.01□□□□□ -1.29
LIG3-206ENST00000586058 SNCAIPQ9Y6H5 919 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 KDM3AQ9Y4C1 1321 aa7.01□□□□□ -1.29
LIG3-206ENST00000586058 A0A1B0GVL5 298 aa7□□□□□ -1.29
LIG3-206ENST00000586058 SPDYE5A6NIY4 337 aa7□□□□□ -1.29
LIG3-206ENST00000586058 B4DLN1 442 aa7□□□□□ -1.29
LIG3-206ENST00000586058 PIK3CDO00329 1044 aa7□□□□□ -1.29
LIG3-206ENST00000586058 CXCL11O14625 94 aa7□□□□□ -1.29
LIG3-206ENST00000586058 NR1I2O75469 434 aa7□□□□□ -1.29
LIG3-206ENST00000586058 SMC2O95347 1197 aa7□□□□□ -1.29
LIG3-206ENST00000586058 CAVIN2O95810 425 aa7□□□□□ -1.29
LIG3-206ENST00000586058 PTPREP23469 700 aa7□□□□□ -1.29
LIG3-206ENST00000586058 UBA7P41226 1012 aa7□□□□□ -1.29
LIG3-206ENST00000586058 CLK2P49760 499 aaKnown RBP7□□□□□ -1.29
LIG3-206ENST00000586058 MRE11P49959 708 aa7□□□□□ -1.29
LIG3-206ENST00000586058 TOB1P50616 345 aaPredicted RBP7□□□□□ -1.29
LIG3-206ENST00000586058 USP11P51784 963 aa7□□□□□ -1.29
LIG3-206ENST00000586058 TPM4P67936 248 aa7□□□□□ -1.29
LIG3-206ENST00000586058 SNAPC2Q13487 334 aa7□□□□□ -1.29
LIG3-206ENST00000586058 PLS1Q14651 629 aa7□□□□□ -1.29
LIG3-206ENST00000586058 COG2Q14746 738 aa7□□□□□ -1.29
LIG3-206ENST00000586058 NPY5RQ15761 445 aa7□□□□□ -1.29
LIG3-206ENST00000586058 SH3D19Q5HYK7 790 aa7□□□□□ -1.29
LIG3-206ENST00000586058 RESP18Q5W5W9 173 aa7□□□□□ -1.29
LIG3-206ENST00000586058 MAP1SQ66K74 1059 aaPredicted RBP7□□□□□ -1.29
LIG3-206ENST00000586058 HAUS3Q68CZ6 603 aa7□□□□□ -1.29
LIG3-206ENST00000586058 PPP4R3AQ6IN85 833 aa7□□□□□ -1.29
LIG3-206ENST00000586058 ZNF526Q8TF50 670 aaPredicted RBP7□□□□□ -1.29
LIG3-206ENST00000586058 OPTNQ96CV9 577 aa7□□□□□ -1.29
LIG3-206ENST00000586058 SLC10A4Q96EP9 437 aa7□□□□□ -1.29
LIG3-206ENST00000586058 PGBD1Q96JS3 809 aa7□□□□□ -1.29
LIG3-206ENST00000586058 TIGD1Q96MW7 591 aa7□□□□□ -1.29
LIG3-206ENST00000586058 TEX13BQ9BXU2 312 aa7□□□□□ -1.29
LIG3-206ENST00000586058 MAGEF1Q9HAY2 307 aa7□□□□□ -1.29
LIG3-206ENST00000586058 RRAGCQ9HB90 399 aa7□□□□□ -1.29
LIG3-206ENST00000586058 SLC38A10Q9HBR0 1119 aa7□□□□□ -1.29
LIG3-206ENST00000586058 GBA2Q9HCG7 927 aaPredicted RBP7□□□□□ -1.29
LIG3-206ENST00000586058 HOMER2Q9NSB8 354 aa7□□□□□ -1.29
LIG3-206ENST00000586058 EMILIN3Q9NT22 766 aa7□□□□□ -1.29
LIG3-206ENST00000586058 FBXO40Q9UH90 709 aa7□□□□□ -1.29
LIG3-206ENST00000586058 DACH1Q9UI36 760 aa7□□□□□ -1.29
LIG3-206ENST00000586058 FBXO2Q9UK22 296 aaPredicted RBP7□□□□□ -1.29
LIG3-206ENST00000586058 KCNH3Q9ULD8 1083 aa7□□□□□ -1.29
LIG3-206ENST00000586058 AFG3L2Q9Y4W6 797 aa7□□□□□ -1.29
LIG3-206ENST00000586058 ZNF236Q9UL36 1845 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 M0R2N6 131 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 PPP1R11O60927 126 aaPredicted RBP6.99□□□□□ -1.29
LIG3-206ENST00000586058 ZNF202O95125 648 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 LIG1P18858 919 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 SREBF1P36956 1147 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 STAT6P42226 847 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 NDUFA8P51970 172 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 SNAP25P60880 206 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 ARHGAP4P98171 946 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 CAMK4Q16566 473 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 STX1AQ16623 288 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 SLC35G1Q2M3R5 365 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 VARS2Q5ST30 1063 aaKnown RBP6.99□□□□□ -1.29
LIG3-206ENST00000586058 KRT79Q5XKE5 535 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 SNRNP48Q6IEG0 339 aaKnown RBP6.99□□□□□ -1.29
LIG3-206ENST00000586058 GPR153Q6NV75 609 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 NSMFQ6X4W1 530 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 RNF207Q6ZRF8 634 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms