RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 TOX2Q96NM4 488 aa17.6■□□□□ 0.41
CLIP3-202ENST00000585466 NEK1Q96PY6 1258 aa17.6■□□□□ 0.41
CLIP3-202ENST00000585466 PXMP2Q9NR77 195 aa17.6■□□□□ 0.41
CLIP3-202ENST00000585466 KIAA0355O15063 1070 aa17.59■□□□□ 0.41
CLIP3-202ENST00000585466 PQBP1O60828 265 aaKnown RBP17.59■□□□□ 0.41
CLIP3-202ENST00000585466 CFBP00751 764 aa17.59■□□□□ 0.41
CLIP3-202ENST00000585466 NEFLP07196 543 aa17.59■□□□□ 0.41
CLIP3-202ENST00000585466 CLTBP09497 229 aa17.59■□□□□ 0.41
CLIP3-202ENST00000585466 NOL8Q76FK4 1167 aaKnown RBP17.59■□□□□ 0.41
CLIP3-202ENST00000585466 RAB11FIP4Q86YS3 637 aa17.59■□□□□ 0.41
CLIP3-202ENST00000585466 TMTC2Q8N394 836 aa17.59■□□□□ 0.41
CLIP3-202ENST00000585466 NSUN6Q8TEA1 469 aaKnown RBP17.59■□□□□ 0.41
CLIP3-202ENST00000585466 IWS1Q96ST2 819 aa17.59■□□□□ 0.41
CLIP3-202ENST00000585466 RMDN3Q96TC7 470 aa17.59■□□□□ 0.41
CLIP3-202ENST00000585466 TBX21Q9UL17 535 aa17.59■□□□□ 0.41
CLIP3-202ENST00000585466 BRPF3Q9ULD4 1205 aa17.59■□□□□ 0.41
CLIP3-202ENST00000585466 FRMPD4Q14CM0 1322 aa17.58■□□□□ 0.4
CLIP3-202ENST00000585466 A0A0U1RQG5 324 aaPredicted RBP17.58■□□□□ 0.4
CLIP3-202ENST00000585466 ARVCFO00192 962 aa17.58■□□□□ 0.4
CLIP3-202ENST00000585466 RGS20O76081 388 aa17.58■□□□□ 0.4
CLIP3-202ENST00000585466 HOXA13P31271 388 aaPredicted RBP17.58■□□□□ 0.4
CLIP3-202ENST00000585466 HSPA4P34932 840 aa17.58■□□□□ 0.4
CLIP3-202ENST00000585466 APOA5Q6Q788 366 aa17.58■□□□□ 0.4
CLIP3-202ENST00000585466 DHX32Q7L7V1 743 aaKnown RBP17.58■□□□□ 0.4
CLIP3-202ENST00000585466 FAM126BQ8IXS8 530 aa17.58■□□□□ 0.4
CLIP3-202ENST00000585466 TDHQ8IZJ6 230 aa17.58■□□□□ 0.4
CLIP3-202ENST00000585466 CMTR1Q8N1G2 835 aaKnown RBP17.58■□□□□ 0.4
CLIP3-202ENST00000585466 IL31RAQ8NI17 732 aa17.58■□□□□ 0.4
CLIP3-202ENST00000585466 CTCFLQ8NI51 663 aaPredicted RBP17.58■□□□□ 0.4
CLIP3-202ENST00000585466 SCFD2Q8WU76 684 aa17.58■□□□□ 0.4
CLIP3-202ENST00000585466 UBE2OQ9C0C9 1292 aaKnown RBP17.58■□□□□ 0.4
CLIP3-202ENST00000585466 AP5M1Q9H0R1 490 aa17.58■□□□□ 0.4
CLIP3-202ENST00000585466 PRDM5Q9NQX1 630 aaPredicted RBP17.58■□□□□ 0.4
CLIP3-202ENST00000585466 PPP4R2Q9NY27 417 aa17.58■□□□□ 0.4
CLIP3-202ENST00000585466 MAP3K20Q9NYL2 800 aaKnown RBP17.58■□□□□ 0.4
CLIP3-202ENST00000585466 CCDC69A6NI79 296 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 CD4P01730 458 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 NR3C2P08235 984 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 EIF2AK2P19525 551 aaKnown RBP17.57■□□□□ 0.4
CLIP3-202ENST00000585466 KIF5BP33176 963 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 FUT2Q10981 343 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 PPP2R5BQ15173 497 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 ERICH6BQ5W0A0 696 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 NFXL1Q6ZNB6 911 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 TMTC3Q6ZXV5 915 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 SAMD3Q8N6K7 520 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 PIBF1Q8WXW3 757 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 BADQ92934 168 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 PDCD2LQ9BRP1 358 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 SNX14Q9Y5W7 946 aa17.57■□□□□ 0.4
CLIP3-202ENST00000585466 A6NJR5 290 aa17.56■□□□□ 0.4
CLIP3-202ENST00000585466 NKRFO15226 690 aaKnown RBP eCLIP17.56■□□□□ 0.4
CLIP3-202ENST00000585466 CABYRO75952 493 aa17.56■□□□□ 0.4
CLIP3-202ENST00000585466 CPA1P15085 419 aa17.56■□□□□ 0.4
CLIP3-202ENST00000585466 PSMC6P62333 389 aa17.56■□□□□ 0.4
CLIP3-202ENST00000585466 PURAQ00577 322 aaKnown RBP17.56■□□□□ 0.4
CLIP3-202ENST00000585466 LRIT3Q3SXY7 679 aa17.56■□□□□ 0.4
CLIP3-202ENST00000585466 FANCBQ8NB91 859 aa17.56■□□□□ 0.4
CLIP3-202ENST00000585466 OR6J1Q8NGC5 347 aa17.56■□□□□ 0.4
CLIP3-202ENST00000585466 LRCH3Q96II8 777 aa17.56■□□□□ 0.4
CLIP3-202ENST00000585466 MPHOSPH6Q99547 160 aaKnown RBP17.56■□□□□ 0.4
CLIP3-202ENST00000585466 LZTS2Q9BRK4 669 aa17.56■□□□□ 0.4
CLIP3-202ENST00000585466 FAM217BQ9NTX9 383 aaPredicted RBP17.56■□□□□ 0.4
CLIP3-202ENST00000585466 SLC12A7Q9Y666 1083 aa17.56■□□□□ 0.4
CLIP3-202ENST00000585466 MYH7BA7E2Y1 1941 aa17.56■□□□□ 0.4
CLIP3-202ENST00000585466 CNTNAP5Q8WYK1 1306 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 B4DLN1 442 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 CALM1P0DP23 149 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 CALM2P0DP24 149 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 CALM3P0DP25 149 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 TXNP10599 105 aaKnown RBP17.55■□□□□ 0.4
CLIP3-202ENST00000585466 GNAQP50148 359 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 MRPL12P52815 198 aaKnown RBP17.55■□□□□ 0.4
CLIP3-202ENST00000585466 EPHB4P54760 987 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 ARHGAP1Q07960 439 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 KRT32Q14532 448 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 TTLL4Q14679 1199 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 PGM5Q15124 567 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 STXBP2Q15833 593 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 ARHGEF16Q5VV41 709 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 MICU3Q86XE3 530 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 RRP36Q96EU6 259 aaKnown RBP17.55■□□□□ 0.4
CLIP3-202ENST00000585466 PRKAG2Q9UGJ0 569 aa17.55■□□□□ 0.4
CLIP3-202ENST00000585466 LAMA2P24043 3122 aaKnown RBP17.54■□□□□ 0.4
CLIP3-202ENST00000585466 MROH7Q68CQ1 1323 aa17.54■□□□□ 0.4
CLIP3-202ENST00000585466 DCDC2CA8MYV0 355 aa17.54■□□□□ 0.4
CLIP3-202ENST00000585466 GCOM1H8Y6P7 765 aaPredicted RBP17.54■□□□□ 0.4
CLIP3-202ENST00000585466 MEIS2O14770 477 aa17.54■□□□□ 0.4
CLIP3-202ENST00000585466 EIF3JO75822 258 aaKnown RBP17.54■□□□□ 0.4
CLIP3-202ENST00000585466 POLR2MP0CAP2 368 aa17.54■□□□□ 0.4
CLIP3-202ENST00000585466 TRAF1Q13077 416 aa17.54■□□□□ 0.4
CLIP3-202ENST00000585466 ITGA7Q13683 1181 aa17.54■□□□□ 0.4
CLIP3-202ENST00000585466 LY6KQ17RY6 165 aa17.54■□□□□ 0.4
CLIP3-202ENST00000585466 C9orf50Q5SZB4 431 aa17.54■□□□□ 0.4
CLIP3-202ENST00000585466 SEPT14Q6ZU15 432 aa17.54■□□□□ 0.4
CLIP3-202ENST00000585466 VSIG10LQ86VR7 867 aa17.54■□□□□ 0.4
CLIP3-202ENST00000585466 LBHD1Q9BQE6 289 aaPredicted RBP17.54■□□□□ 0.4
CLIP3-202ENST00000585466 TMEM39AQ9NV64 488 aa17.54■□□□□ 0.4
CLIP3-202ENST00000585466 DDX41Q9UJV9 622 aaKnown RBP17.54■□□□□ 0.4
CLIP3-202ENST00000585466 hCG_1642624A0A1W2PR95 340 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms