RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 DDAH1O94760 285 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 DDNO94850 711 aaPredicted RBP8.04□□□□□ -1.12
VPS53-217ENST00000575100 GTF2A2P52657 109 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 GALEQ14376 348 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 GRM2Q14416 872 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 ZC3H12BQ5HYM0 836 aaKnown RBP8.04□□□□□ -1.12
VPS53-217ENST00000575100 SUSD4Q5VX71 490 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 TTLL5Q6EMB2 1281 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 NBPF11Q86T75 865 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 LDHDQ86WU2 507 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 CCDC24Q8N4L8 307 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 SLC10A4Q96EP9 437 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 ETNK1Q9HBU6 452 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 ZFYVE28Q9HCC9 887 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 KLHL11Q9NVR0 708 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 PHTF1Q9UMS5 762 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 IBTKQ9P2D0 1353 aaPredicted RBP8.03□□□□□ -1.12
VPS53-217ENST00000575100 POTEB3A0JP26 581 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 C9IYK1 514 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 NPR1P16066 1061 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 TNFAIP3P21580 790 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 SCP2P22307 547 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 WNT7BP56706 349 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 GJA9P57773 515 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 STRN3Q13033 797 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 CAMK2GQ13555 558 aaPredicted RBP8.03□□□□□ -1.12
VPS53-217ENST00000575100 STAT4Q14765 748 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 MTFR1Q15390 333 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 SEZ6Q53EL9 994 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 POTEBQ6S5H4 581 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 PPP1R42Q7Z4L9 355 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 ZBTB38Q8NAP3 1195 aaPredicted RBP8.03□□□□□ -1.12
VPS53-217ENST00000575100 TTC16Q8NEE8 873 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 SNX29Q8TEQ0 813 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 TAF1DQ9H5J8 278 aaPredicted RBP8.03□□□□□ -1.12
VPS53-217ENST00000575100 SCUBE2Q9NQ36 999 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 ANKIB1Q9P2G1 1089 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 NIP7Q9Y221 180 aaKnown RBP eCLIP8.03□□□□□ -1.12
VPS53-217ENST00000575100 TRPM7Q96QT4 1865 aa8.03□□□□□ -1.12
VPS53-217ENST00000575100 DXOO77932 396 aaKnown RBP8.02□□□□□ -1.12
VPS53-217ENST00000575100 ECE1P42892 770 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 FOXO4P98177 505 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 ATP8B2P98198 1209 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 LMNB2Q03252 620 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 MINDY4Q4G0A6 757 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 FNDC3BQ53EP0 1204 aaKnown RBP8.02□□□□□ -1.12
VPS53-217ENST00000575100 SNAP47Q5SQN1 464 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 SYDE2Q5VT97 1194 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 C1orf228Q6PIY5 440 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 C6orf15Q6UXA7 325 aaPredicted RBP8.02□□□□□ -1.12
VPS53-217ENST00000575100 CENPQQ7L2Z9 268 aaPredicted RBP8.02□□□□□ -1.12
VPS53-217ENST00000575100 MAATS1Q7Z4T9 603 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 RPAP2Q8IXW5 612 aaPredicted RBP8.02□□□□□ -1.12
VPS53-217ENST00000575100 KLHDC4Q8TBB5 520 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 PLD4Q96BZ4 506 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 CLUHP3Q96NS8 147 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 SPATA9Q9BWV2 254 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 LRRC3Q9BY71 257 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 LUC7LQ9NQ29 371 aaKnown RBP8.02□□□□□ -1.12
VPS53-217ENST00000575100 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.02□□□□□ -1.12
VPS53-217ENST00000575100 INTS7Q9NVH2 962 aaKnown RBP8.02□□□□□ -1.12
VPS53-217ENST00000575100 ZNF652Q9Y2D9 606 aa8.02□□□□□ -1.12
VPS53-217ENST00000575100 RIC1Q4ADV7 1423 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 A6NCN8 305 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 SRGAP3O43295 1099 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 NTSR2O95665 410 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 ITGBL1O95965 494 aaPredicted RBP8.02□□□□□ -1.13
VPS53-217ENST00000575100 RXRGP48443 463 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 HIRAP54198 1017 aaPredicted RBP8.02□□□□□ -1.13
VPS53-217ENST00000575100 ERVK-9P63128 1117 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 NUCB1Q02818 461 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 ELF2Q15723 593 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 MAP3K11Q16584 847 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 RTN1Q16799 776 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 HSP90AB3PQ58FF7 597 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 WDR45BQ5MNZ6 344 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 TSHZ3Q63HK5 1081 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 IGF2-ASQ6U949 168 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 FERD3LQ96RJ6 166 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 RWDD1Q9H446 243 aaPredicted RBP8.02□□□□□ -1.13
VPS53-217ENST00000575100 OSBPL3Q9H4L5 887 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 SUV39H2Q9H5I1 410 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 NLRC4Q9NPP4 1024 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 KLK14Q9P0G3 267 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 IP6K2Q9UHH9 426 aa8.02□□□□□ -1.13
VPS53-217ENST00000575100 TRMT112Q9UI30 125 aaKnown RBP8.02□□□□□ -1.13
VPS53-217ENST00000575100 ABHD14A-ACY1A0A1B0GW23 586 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 GOLIM4O00461 696 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 PLD2O14939 933 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 AGR2O95994 175 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 PCCAP05165 728 aaPredicted RBP8.01□□□□□ -1.13
VPS53-217ENST00000575100 ZBED6P86452 979 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 MTX1Q13505 466 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 LTBP1Q14766 1721 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 GRM3Q14832 879 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 TAF11Q15544 211 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 RABL6Q3YEC7 729 aaPredicted RBP8.01□□□□□ -1.13
VPS53-217ENST00000575100 XRRA1Q6P2D8 792 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 XKR5Q6UX68 686 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 SAMD7Q7Z3H4 446 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms