RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 GRIK5Q16478 980 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 GKAP1Q5VSY0 366 aaPredicted RBP10.6□□□□□ -0.71
CCDC40-212ENST00000574799 UBLCP1Q8WVY7 318 aaPredicted RBP10.6□□□□□ -0.71
CCDC40-212ENST00000574799 TAF4BQ92750 862 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 IFIH1Q9BYX4 1025 aaKnown RBP10.6□□□□□ -0.71
CCDC40-212ENST00000574799 SIPA1L1O43166 1804 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 EIF4E1BA6NMX2 242 aaKnown RBP10.6□□□□□ -0.71
CCDC40-212ENST00000574799 ZNF174Q15697 407 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 RTN1Q16799 776 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 EGFL6Q8IUX8 553 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 KLHL7Q8IXQ5 586 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 ANKS4BQ8N8V4 417 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 CEP120Q8N960 986 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 TRIM58Q8NG06 486 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 SMCR8Q8TEV9 937 aaPredicted RBP10.6□□□□□ -0.71
CCDC40-212ENST00000574799 ZKSCAN3Q9BRR0 538 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 AFF2P51816 1311 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 PSMD14O00487 310 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 GNPATO15228 680 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 HEXIM1O94992 359 aaKnown RBP10.6□□□□□ -0.71
CCDC40-212ENST00000574799 SLC5A1P13866 664 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 PTPREP23469 700 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 TYW1BQ6NUM6 668 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 BICDL1Q6ZP65 573 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 SPATA4Q8NEY3 305 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 MYCBPAPQ8TBZ2 947 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 SAAL1Q96ER3 474 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 TANGO6Q9C0B7 1094 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 KIF9Q9HAQ2 790 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 VPS54Q9P1Q0 977 aa10.6□□□□□ -0.71
CCDC40-212ENST00000574799 A0A0G2JS52 829 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 APOA5Q6Q788 366 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 SGSM3Q96HU1 749 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 YIPF3Q9GZM5 350 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 LRWD1Q9UFC0 647 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 HYOU1Q9Y4L1 999 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 AMPD2Q01433 879 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 DDR1Q08345 913 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 CACNA2D4Q7Z3S7 1137 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 TSGA10Q9BZW7 698 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 PDE2AO00408 941 aaPredicted RBP10.59□□□□□ -0.71
CCDC40-212ENST00000574799 HGSO14964 777 aaPredicted RBP10.59□□□□□ -0.71
CCDC40-212ENST00000574799 MOCS3O95396 460 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 CD44P16070 742 aaKnown RBP10.59□□□□□ -0.71
CCDC40-212ENST00000574799 TCP1P17987 556 aaKnown RBP10.59□□□□□ -0.71
CCDC40-212ENST00000574799 MDH1P40925 334 aaKnown RBP10.59□□□□□ -0.71
CCDC40-212ENST00000574799 PTGISQ16647 500 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 SGMS1Q86VZ5 419 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 MIGA1Q8NAN2 632 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 SYMPKQ92797 1274 aaKnown RBP10.59□□□□□ -0.71
CCDC40-212ENST00000574799 SELENOSQ9BQE4 189 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 NAPBQ9H115 298 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 MMRN2Q9H8L6 949 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.59□□□□□ -0.71
CCDC40-212ENST00000574799 DUSP10Q9Y6W6 482 aa10.59□□□□□ -0.71
CCDC40-212ENST00000574799 KIF3CO14782 793 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 BUB1O43683 1085 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 FGRP09769 529 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 NFIXQ14938 502 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 TTMPQ5BVD1 217 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 NFRKBQ6P4R8 1299 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 CCDC63Q8NA47 563 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 TSEN2Q8NCE0 465 aaKnown RBP10.58□□□□□ -0.72
CCDC40-212ENST00000574799 SDR42E1Q8WUS8 393 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 PAGE5Q96GU1 130 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 GSDMAQ96QA5 445 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 GOPCQ9HD26 462 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 EHD2Q9NZN4 543 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 DDX20Q9UHI6 824 aaKnown RBP10.58□□□□□ -0.72
CCDC40-212ENST00000574799 CCNL1Q9UK58 526 aaPredicted RBP10.58□□□□□ -0.72
CCDC40-212ENST00000574799 ZBTB12Q9Y330 459 aaPredicted RBP10.58□□□□□ -0.72
CCDC40-212ENST00000574799 hCG_1642624A0A1W2PR95 340 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 TLDC2A0PJX2 215 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 SMIM23A6NLE4 172 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 GUCY1A2P33402 732 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 DYNLL1P63167 89 aaKnown RBP10.58□□□□□ -0.72
CCDC40-212ENST00000574799 CFAP221Q4G0U5 840 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 ZBTB10Q96DT7 871 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 PLIN2Q99541 437 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 A1CFQ9NQ94 594 aaKnown RBP10.58□□□□□ -0.72
CCDC40-212ENST00000574799 RMND1Q9NWS8 449 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 RGPD3A6NKT7 1758 aaPredicted RBP10.58□□□□□ -0.72
CCDC40-212ENST00000574799 RGPD4Q7Z3J3 1758 aa10.58□□□□□ -0.72
CCDC40-212ENST00000574799 PSMA7O14818 248 aa10.57□□□□□ -0.72
CCDC40-212ENST00000574799 CTNNA1P35221 906 aaKnown RBP10.57□□□□□ -0.72
CCDC40-212ENST00000574799 MAGEA1P43355 309 aa10.57□□□□□ -0.72
CCDC40-212ENST00000574799 SEC23AQ15436 765 aa10.57□□□□□ -0.72
CCDC40-212ENST00000574799 TCP11X2Q5H9J9 407 aa10.57□□□□□ -0.72
CCDC40-212ENST00000574799 TBC1D1Q86TI0 1168 aaPredicted RBP10.57□□□□□ -0.72
CCDC40-212ENST00000574799 C2CD5Q86YS7 1000 aa10.57□□□□□ -0.72
CCDC40-212ENST00000574799 DYDC1Q8WWB3 177 aa10.57□□□□□ -0.72
CCDC40-212ENST00000574799 NSUN4Q96CB9 384 aaKnown RBP10.57□□□□□ -0.72
CCDC40-212ENST00000574799 CYFIP2Q96F07 1278 aa10.57□□□□□ -0.72
CCDC40-212ENST00000574799 LACRTQ9GZZ8 138 aa10.57□□□□□ -0.72
CCDC40-212ENST00000574799 NHEJ1Q9H9Q4 299 aaPredicted RBP10.57□□□□□ -0.72
CCDC40-212ENST00000574799 TPX2Q9ULW0 747 aaKnown RBP10.57□□□□□ -0.72
CCDC40-212ENST00000574799 GRIN2DO15399 1336 aa10.57□□□□□ -0.72
CCDC40-212ENST00000574799 CYP2D7A0A087X1C5 515 aa10.57□□□□□ -0.72
CCDC40-212ENST00000574799 GMNCA6NCL1 334 aa10.57□□□□□ -0.72
CCDC40-212ENST00000574799 B4DLN1 442 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms