RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SEPT11Q9NVA2 429 aaKnown RBP16.05■□□□□ 0.16
VPS35-210ENST00000568784 ARPP21Q9UBL0 812 aaPredicted RBP16.05■□□□□ 0.16
VPS35-210ENST00000568784 F8W031 263 aaPredicted RBP16.04■□□□□ 0.16
VPS35-210ENST00000568784 TADA2BQ86TJ2 420 aa16.04■□□□□ 0.16
VPS35-210ENST00000568784 MTA3Q9BTC8 594 aa16.04■□□□□ 0.16
VPS35-210ENST00000568784 LUC7LQ9NQ29 371 aaKnown RBP16.04■□□□□ 0.16
VPS35-210ENST00000568784 BMP2KQ9NSY1 1161 aaPredicted RBP16.04■□□□□ 0.16
VPS35-210ENST00000568784 RBM12Q9NTZ6 932 aaKnown RBP16.04■□□□□ 0.16
VPS35-210ENST00000568784 APBA1Q02410 837 aa16.04■□□□□ 0.16
VPS35-210ENST00000568784 CALCRLQ16602 461 aa16.04■□□□□ 0.16
VPS35-210ENST00000568784 PAPD7Q5XG87 772 aaKnown RBP16.04■□□□□ 0.16
VPS35-210ENST00000568784 KRT79Q5XKE5 535 aa16.04■□□□□ 0.16
VPS35-210ENST00000568784 POTEDQ86YR6 584 aa16.04■□□□□ 0.16
VPS35-210ENST00000568784 SPAG5Q96R06 1193 aa16.04■□□□□ 0.16
VPS35-210ENST00000568784 LSM14BQ9BX40 385 aaKnown RBP16.04■□□□□ 0.16
VPS35-210ENST00000568784 GOLPH3Q9H4A6 298 aa16.04■□□□□ 0.16
VPS35-210ENST00000568784 KIF13AQ9H1H9 1805 aa16.04■□□□□ 0.16
VPS35-210ENST00000568784 NEK8Q86SG6 692 aa16.04■□□□□ 0.16
VPS35-210ENST00000568784 PIGSQ96S52 555 aa16.04■□□□□ 0.16
VPS35-210ENST00000568784 STIM2Q9P246 746 aa16.04■□□□□ 0.16
VPS35-210ENST00000568784 RHOBTB3O94955 611 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 TCP1P17987 556 aaKnown RBP16.03■□□□□ 0.16
VPS35-210ENST00000568784 NNTQ13423 1086 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 REXO1Q8N1G1 1221 aaKnown RBP16.03■□□□□ 0.16
VPS35-210ENST00000568784 ARHGAP20Q9P2F6 1191 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 BACH1O14867 736 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 FGFR1OPO95684 399 aaKnown RBP16.03■□□□□ 0.16
VPS35-210ENST00000568784 GNA11P29992 359 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 CFAP221Q4G0U5 840 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 VWA3BQ502W6 1294 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 CEP85LQ5SZL2 805 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 ICE2Q659A1 982 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 SH3RF3Q8TEJ3 882 aaPredicted RBP16.03■□□□□ 0.16
VPS35-210ENST00000568784 ATP8A2Q9NTI2 1148 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 CAMTA1Q9Y6Y1 1673 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 MPHOSPH10O00566 681 aaKnown RBP16.03■□□□□ 0.16
VPS35-210ENST00000568784 CORO7P57737 925 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 IRX3P78415 501 aaPredicted RBP16.03■□□□□ 0.16
VPS35-210ENST00000568784 KIAA0753Q2KHM9 967 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 TBC1D5Q92609 795 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 ADAMTS1Q9UHI8 967 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 ANAPC4Q9UJX5 808 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 MYO5AQ9Y4I1 1855 aaKnown RBP16.03■□□□□ 0.16
VPS35-210ENST00000568784 CEP104O60308 925 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 CARSP49589 748 aaKnown RBP16.03■□□□□ 0.16
VPS35-210ENST00000568784 GUCY1A3Q02108 690 aa16.03■□□□□ 0.16
VPS35-210ENST00000568784 SMIM23A6NLE4 172 aa16.02■□□□□ 0.16
VPS35-210ENST00000568784 BAG3O95817 575 aa16.02■□□□□ 0.16
VPS35-210ENST00000568784 SLC9C1Q4G0N8 1177 aa16.02■□□□□ 0.16
VPS35-210ENST00000568784 TXNRD3Q86VQ6 643 aa16.02■□□□□ 0.16
VPS35-210ENST00000568784 LRRC47Q8N1G4 583 aaKnown RBP16.02■□□□□ 0.16
VPS35-210ENST00000568784 FNBP4Q8N3X1 1017 aaPredicted RBP16.02■□□□□ 0.16
VPS35-210ENST00000568784 ZNF507Q8TCN5 953 aa16.02■□□□□ 0.16
VPS35-210ENST00000568784 TMEM47Q9BQJ4 181 aa16.02■□□□□ 0.16
VPS35-210ENST00000568784 KCNK3O14649 394 aa16.02■□□□□ 0.15
VPS35-210ENST00000568784 ZNF263O14978 683 aa16.02■□□□□ 0.15
VPS35-210ENST00000568784 EPHB4P54760 987 aa16.02■□□□□ 0.15
VPS35-210ENST00000568784 KRT25Q7Z3Z0 450 aa16.02■□□□□ 0.15
VPS35-210ENST00000568784 IFT20Q8IY31 132 aa16.02■□□□□ 0.15
VPS35-210ENST00000568784 EFCAB13Q8IY85 973 aa16.02■□□□□ 0.15
VPS35-210ENST00000568784 TSEN2Q8NCE0 465 aaKnown RBP16.02■□□□□ 0.15
VPS35-210ENST00000568784 VIPAS39Q9H9C1 493 aa16.02■□□□□ 0.15
VPS35-210ENST00000568784 ADAT2Q7Z6V5 191 aaKnown RBP16.02■□□□□ 0.15
VPS35-210ENST00000568784 CCDC84Q86UT8 332 aaPredicted RBP16.02■□□□□ 0.15
VPS35-210ENST00000568784 GOPCQ9HD26 462 aa16.02■□□□□ 0.15
VPS35-210ENST00000568784 MYH2Q9UKX2 1941 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 A0A087WUV0 522 aaPredicted RBP16.01■□□□□ 0.15
VPS35-210ENST00000568784 ANO9A1A5B4 782 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 E7EVH7 732 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 KLRC4O43908 158 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 PALMO75781 387 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 NTSR2O95665 410 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 KLHL30Q0D2K2 578 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 IKQ13123 557 aaPredicted RBP16.01■□□□□ 0.15
VPS35-210ENST00000568784 RETREG2Q8NC44 543 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 GLIS3Q8NEA6 775 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 LARP4BQ92615 738 aaKnown RBP16.01■□□□□ 0.15
VPS35-210ENST00000568784 EYA3Q99504 573 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 RAB34Q9BZG1 259 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 KCNB1Q14721 858 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 HERC4Q5GLZ8 1057 aaPredicted RBP16.01■□□□□ 0.15
VPS35-210ENST00000568784 DCAF17Q5H9S7 520 aaPredicted RBP16.01■□□□□ 0.15
VPS35-210ENST00000568784 SFMBT2Q5VUG0 894 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 FAM133AQ8N9E0 248 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 UBLCP1Q8WVY7 318 aaPredicted RBP16.01■□□□□ 0.15
VPS35-210ENST00000568784 SH2D4AQ9H788 454 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 PLEKHG2Q9H7P9 1386 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 CAMTA2O94983 1202 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 CLEC10AQ8IUN9 316 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 ZNF384Q8TF68 577 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 SETDB2Q96T68 719 aa16.01■□□□□ 0.15
VPS35-210ENST00000568784 TARSL2A2RTX5 802 aaKnown RBP16■□□□□ 0.15
VPS35-210ENST00000568784 TDP2O95551 362 aa16■□□□□ 0.15
VPS35-210ENST00000568784 MAN2A1Q16706 1144 aa16■□□□□ 0.15
VPS35-210ENST00000568784 NAA35Q5VZE5 725 aa16■□□□□ 0.15
VPS35-210ENST00000568784 RCSD1Q6JBY9 416 aa16■□□□□ 0.15
VPS35-210ENST00000568784 SEMA6BQ9H3T3 888 aa16■□□□□ 0.15
VPS35-210ENST00000568784 KBTBD4Q9NVX7 518 aa16■□□□□ 0.15
VPS35-210ENST00000568784 GOLGA8KD6RF30 607 aa16■□□□□ 0.15
VPS35-210ENST00000568784 ITPK1Q13572 414 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms