RNA–Protein interactions for RNA: ENST00000566779.1

GTF3C1-206, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-206ENST00000566779 SH3RF1Q7Z6J0 888 aa11.77□□□□□ -0.53
GTF3C1-206ENST00000566779 FBXO11Q86XK2 927 aa11.77□□□□□ -0.53
GTF3C1-206ENST00000566779 LRCH3Q96II8 777 aa11.77□□□□□ -0.53
GTF3C1-206ENST00000566779 GLT1D1Q96MS3 346 aa11.77□□□□□ -0.53
GTF3C1-206ENST00000566779 MPHOSPH6Q99547 160 aaKnown RBP11.77□□□□□ -0.53
GTF3C1-206ENST00000566779 GDF15Q99988 308 aa11.77□□□□□ -0.53
GTF3C1-206ENST00000566779 PDLIM7Q9NR12 457 aa11.77□□□□□ -0.53
GTF3C1-206ENST00000566779 PNMA2Q9UL42 364 aa11.77□□□□□ -0.53
GTF3C1-206ENST00000566779 GRXCR2A6NFK2 248 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 MOXD2PA6NHM9 499 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 SOX1O00570 391 aaPredicted RBP11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 TRIM66O15016 1216 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 PRC1O43663 620 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 CFBP00751 764 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 CLTBP09497 229 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 SMPD1P17405 629 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 EIF2AK2P19525 551 aaKnown RBP11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 ANTXR2P58335 489 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 TMEM63BQ5T3F8 832 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 CXCL17Q6UXB2 119 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 TMEM92Q6UXU6 159 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 CATIPQ7Z7H3 387 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 PCSK9Q8NBP7 692 aaKnown RBP11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 ANKS1AQ92625 1134 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 MAP4K1Q92918 833 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 BADQ92934 168 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 LRRC2Q9BYS8 371 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 KATNBL1Q9H079 304 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 LSG1Q9H089 658 aaKnown RBP11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 JMJD4Q9H9V9 463 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 VTA1Q9NP79 307 aa11.76□□□□□ -0.53
GTF3C1-206ENST00000566779 SLC27A2O14975 620 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 CDC45O75419 566 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 RXRAP19793 462 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 GRM4Q14833 912 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 FSCN1Q16658 493 aaKnown RBP11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 BMP2KLQ5H9B9 411 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 MB21D2Q8IYB1 491 aaPredicted RBP11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 TDHQ8IZJ6 230 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 OR6J1Q8NGC5 347 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 CTCFLQ8NI51 663 aaPredicted RBP11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 TBC1D5Q92609 795 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 PIGSQ96S52 555 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 AMNQ9BXJ7 453 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 WDR11Q9BZH6 1224 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 UPF3AQ9H1J1 476 aaKnown RBP11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 PRO3102Q9H379 93 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 TMEM39AQ9NV64 488 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 MAD2L2Q9UI95 211 aa11.75□□□□□ -0.53
GTF3C1-206ENST00000566779 A0A0U1RQG5 324 aaPredicted RBP11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 TRIM43BA6NCK2 446 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 CCDC69A6NI79 296 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 DCDC2CA8MYV0 355 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 B4DLN1 442 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 SORBS3O60504 671 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 MYL3P08590 195 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 RAG1P15918 1043 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 HOXA13P31271 388 aaPredicted RBP11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 MRPL12P52815 198 aaKnown RBP11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 GJA9P57773 515 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 PSMC6P62333 389 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 SNX17Q15036 470 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 PPP2R5BQ15173 497 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 ARHGEF16Q5VV41 709 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 CREB3L3Q68CJ9 461 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 SEPT14Q6ZU15 432 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 ZNF654Q8IZM8 581 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 KLHDC9Q8NEP7 349 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 PPP1R13LQ8WUF5 828 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 TRIM43Q96BQ3 446 aaPredicted RBP11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 TAAR1Q96RJ0 339 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 TSEN34Q9BSV6 310 aaKnown RBP11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 PPP1R12CQ9BZL4 782 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 NAP1L2Q9ULW6 460 aaPredicted RBP11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 MRPL11Q9Y3B7 192 aaKnown RBP11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 PCDHA1Q9Y5I3 950 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 GBF1Q92538 1859 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 TRIP12Q14669 1992 aaPredicted RBP11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 SCN5AQ14524 2016 aa11.74□□□□□ -0.53
GTF3C1-206ENST00000566779 A0A1W2PPC1 479 aa11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 ZBTB5O15062 677 aa11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 ZEB2O60315 1214 aa11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 PPP1R11O60927 126 aaPredicted RBP11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 MYCLP12524 364 aaPredicted RBP11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 CST5P28325 142 aaPredicted RBP11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 MCM5P33992 734 aa11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 TAPT1Q6NXT6 567 aa11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 FCHSD1Q86WN1 690 aa11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 MCF2L2Q86YR7 1114 aa11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 OXER1Q8TDS5 423 aa11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 SYTL5Q8TDW5 730 aaPredicted RBP11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 COPS5Q92905 334 aa11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 TCEANC2Q96MN5 208 aa11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 RMDN3Q96TC7 470 aa11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 KDM4CQ9H3R0 1056 aa11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 COL20A1Q9P218 1284 aa11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 GNEQ9Y223 722 aaKnown RBP11.73□□□□□ -0.53
GTF3C1-206ENST00000566779 PALM3A6NDB9 673 aaPredicted RBP11.72□□□□□ -0.53
GTF3C1-206ENST00000566779 TLR3O15455 904 aaKnown RBP11.72□□□□□ -0.53
GTF3C1-206ENST00000566779 TXNP10599 105 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms