RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NEK4P51957 841 aa19.94■□□□□ 0.78
CLN3-217ENST00000565354 TOB2Q14106 344 aaPredicted RBP19.94■□□□□ 0.78
CLN3-217ENST00000565354 PPP2R5BQ15173 497 aa19.94■□□□□ 0.78
CLN3-217ENST00000565354 TMTC3Q6ZXV5 915 aa19.94■□□□□ 0.78
CLN3-217ENST00000565354 CMTR1Q8N1G2 835 aaKnown RBP19.94■□□□□ 0.78
CLN3-217ENST00000565354 TMEM39AQ9NV64 488 aa19.94■□□□□ 0.78
CLN3-217ENST00000565354 MRPL11Q9Y3B7 192 aaKnown RBP19.94■□□□□ 0.78
CLN3-217ENST00000565354 MYH6P13533 1939 aa19.94■□□□□ 0.78
CLN3-217ENST00000565354 PNMA6FA0A0J9YX94 578 aa19.93■□□□□ 0.78
CLN3-217ENST00000565354 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.93■□□□□ 0.78
CLN3-217ENST00000565354 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.93■□□□□ 0.78
CLN3-217ENST00000565354 CYTH3O43739 400 aa19.93■□□□□ 0.78
CLN3-217ENST00000565354 PGK2P07205 417 aa19.93■□□□□ 0.78
CLN3-217ENST00000565354 MUM1L1Q5H9M0 696 aa19.93■□□□□ 0.78
CLN3-217ENST00000565354 SRBD1Q8N5C6 995 aaKnown RBP19.93■□□□□ 0.78
CLN3-217ENST00000565354 IL17RAQ96F46 866 aa19.93■□□□□ 0.78
CLN3-217ENST00000565354 LARP6Q9BRS8 491 aaKnown RBP19.93■□□□□ 0.78
CLN3-217ENST00000565354 TINF2Q9BSI4 451 aa19.93■□□□□ 0.78
CLN3-217ENST00000565354 PTPDC1A2A3K4 754 aa19.92■□□□□ 0.78
CLN3-217ENST00000565354 TNFRSF10AO00220 468 aa19.92■□□□□ 0.78
CLN3-217ENST00000565354 RBM25P49756 843 aaKnown RBP19.92■□□□□ 0.78
CLN3-217ENST00000565354 NOL8Q76FK4 1167 aaKnown RBP19.92■□□□□ 0.78
CLN3-217ENST00000565354 ANKRD33Q7Z3H0 272 aa19.92■□□□□ 0.78
CLN3-217ENST00000565354 MTMR8Q96EF0 704 aa19.92■□□□□ 0.78
CLN3-217ENST00000565354 TOX2Q96NM4 488 aa19.92■□□□□ 0.78
CLN3-217ENST00000565354 BACH2Q9BYV9 841 aa19.92■□□□□ 0.78
CLN3-217ENST00000565354 ZNF576Q9H609 170 aa19.92■□□□□ 0.78
CLN3-217ENST00000565354 A1CFQ9NQ94 594 aaKnown RBP19.92■□□□□ 0.78
CLN3-217ENST00000565354 PCDHA1Q9Y5I3 950 aa19.92■□□□□ 0.78
CLN3-217ENST00000565354 BDP1A6H8Y1 2624 aa19.92■□□□□ 0.78
CLN3-217ENST00000565354 PDIA3P30101 505 aaKnown RBP19.91■□□□□ 0.78
CLN3-217ENST00000565354 AK2P54819 239 aa19.91■□□□□ 0.78
CLN3-217ENST00000565354 CCT2P78371 535 aaKnown RBP19.91■□□□□ 0.78
CLN3-217ENST00000565354 FAAP100Q0VG06 881 aa19.91■□□□□ 0.78
CLN3-217ENST00000565354 STK3Q13188 491 aa19.91■□□□□ 0.78
CLN3-217ENST00000565354 SLC35G1Q2M3R5 365 aa19.91■□□□□ 0.78
CLN3-217ENST00000565354 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.91■□□□□ 0.78
CLN3-217ENST00000565354 ZNF274Q96GC6 653 aaPredicted RBP19.91■□□□□ 0.78
CLN3-217ENST00000565354 ALDH8A1Q9H2A2 487 aaPredicted RBP19.91■□□□□ 0.78
CLN3-217ENST00000565354 DIS3Q9Y2L1 958 aaKnown RBP19.91■□□□□ 0.78
CLN3-217ENST00000565354 CHD9Q3L8U1 2897 aa19.9■□□□□ 0.78
CLN3-217ENST00000565354 DCDC2CA8MYV0 355 aa19.9■□□□□ 0.78
CLN3-217ENST00000565354 NFIBO00712 420 aa19.9■□□□□ 0.78
CLN3-217ENST00000565354 CPLX1O14810 134 aa19.9■□□□□ 0.78
CLN3-217ENST00000565354 ZNF865P0CJ78 1059 aaPredicted RBP19.9■□□□□ 0.78
CLN3-217ENST00000565354 AKR1A1P14550 325 aa19.9■□□□□ 0.78
CLN3-217ENST00000565354 COL9A1P20849 921 aa19.9■□□□□ 0.78
CLN3-217ENST00000565354 CDC27P30260 824 aa19.9■□□□□ 0.78
CLN3-217ENST00000565354 ADD1P35611 737 aaKnown RBP19.9■□□□□ 0.78
CLN3-217ENST00000565354 ZNF792Q3KQV3 632 aa19.9■□□□□ 0.78
CLN3-217ENST00000565354 CPLX2Q6PUV4 134 aaKnown RBP19.9■□□□□ 0.78
CLN3-217ENST00000565354 RNF207Q6ZRF8 634 aa19.9■□□□□ 0.78
CLN3-217ENST00000565354 MCF2L2Q86YR7 1114 aa19.9■□□□□ 0.78
CLN3-217ENST00000565354 TIFAQ96CG3 184 aa19.9■□□□□ 0.78
CLN3-217ENST00000565354 TSEN34Q9BSV6 310 aaKnown RBP19.9■□□□□ 0.78
CLN3-217ENST00000565354 ADAMTS4O75173 837 aa19.89■□□□□ 0.77
CLN3-217ENST00000565354 CALML3P27482 149 aa19.89■□□□□ 0.77
CLN3-217ENST00000565354 EVCP57679 992 aa19.89■□□□□ 0.77
CLN3-217ENST00000565354 AKAP17AQ02040 695 aaKnown RBP19.89■□□□□ 0.77
CLN3-217ENST00000565354 NID2Q14112 1375 aa19.89■□□□□ 0.77
CLN3-217ENST00000565354 CLEC4DQ8WXI8 215 aa19.89■□□□□ 0.77
CLN3-217ENST00000565354 CNTNAP5Q8WYK1 1306 aa19.89■□□□□ 0.77
CLN3-217ENST00000565354 LENG1Q96BZ8 264 aaPredicted RBP19.89■□□□□ 0.77
CLN3-217ENST00000565354 SLKQ9H2G2 1235 aaPredicted RBP19.89■□□□□ 0.77
CLN3-217ENST00000565354 STARD7Q9NQZ5 370 aa19.89■□□□□ 0.77
CLN3-217ENST00000565354 CYP39A1Q9NYL5 469 aa19.89■□□□□ 0.77
CLN3-217ENST00000565354 hCG_1642624A0A1W2PR95 340 aa19.88■□□□□ 0.77
CLN3-217ENST00000565354 PPP1R11O60927 126 aaPredicted RBP19.88■□□□□ 0.77
CLN3-217ENST00000565354 TIMP1P01033 207 aa19.88■□□□□ 0.77
CLN3-217ENST00000565354 ACLYP53396 1101 aa19.88■□□□□ 0.77
CLN3-217ENST00000565354 BAATQ14032 418 aaPredicted RBP19.88■□□□□ 0.77
CLN3-217ENST00000565354 RABEP1Q15276 862 aa19.88■□□□□ 0.77
CLN3-217ENST00000565354 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.88■□□□□ 0.77
CLN3-217ENST00000565354 CNPY2Q9Y2B0 182 aa19.88■□□□□ 0.77
CLN3-217ENST00000565354 SYNRGQ9UMZ2 1314 aa19.87■□□□□ 0.77
CLN3-217ENST00000565354 DNAJC25-GNG10A0A024R161 153 aa19.87■□□□□ 0.77
CLN3-217ENST00000565354 CFBP00751 764 aa19.87■□□□□ 0.77
CLN3-217ENST00000565354 HEATR3Q7Z4Q2 680 aa19.87■□□□□ 0.77
CLN3-217ENST00000565354 TBC1D32Q96NH3 1257 aa19.87■□□□□ 0.77
CLN3-217ENST00000565354 NCOA5Q9HCD5 579 aaKnown RBP19.87■□□□□ 0.77
CLN3-217ENST00000565354 FAM217BQ9NTX9 383 aaPredicted RBP19.87■□□□□ 0.77
CLN3-217ENST00000565354 ADD3Q9UEY8 706 aaKnown RBP19.87■□□□□ 0.77
CLN3-217ENST00000565354 TBX21Q9UL17 535 aa19.87■□□□□ 0.77
CLN3-217ENST00000565354 V9GY48 417 aaPredicted RBP19.87■□□□□ 0.77
CLN3-217ENST00000565354 BAZ2BQ9UIF8 2168 aaKnown RBP19.87■□□□□ 0.77
CLN3-217ENST00000565354 MOXD2PA6NHM9 499 aa19.86■□□□□ 0.77
CLN3-217ENST00000565354 RPS6P62753 249 aaKnown RBP19.86■□□□□ 0.77
CLN3-217ENST00000565354 CNTN2Q02246 1040 aa19.86■□□□□ 0.77
CLN3-217ENST00000565354 MFSD5Q6N075 450 aa19.86■□□□□ 0.77
CLN3-217ENST00000565354 SLC30A10Q6XR72 485 aa19.86■□□□□ 0.77
CLN3-217ENST00000565354 KLHDC9Q8NEP7 349 aa19.86■□□□□ 0.77
CLN3-217ENST00000565354 GAS2L1Q99501 681 aaPredicted RBP19.86■□□□□ 0.77
CLN3-217ENST00000565354 MPHOSPH6Q99547 160 aaKnown RBP19.86■□□□□ 0.77
CLN3-217ENST00000565354 TPCN1Q9ULQ1 816 aa19.86■□□□□ 0.77
CLN3-217ENST00000565354 MCM3APO60318 1980 aa19.85■□□□□ 0.77
CLN3-217ENST00000565354 ST18O60284 1047 aa19.85■□□□□ 0.77
CLN3-217ENST00000565354 KCNA10Q16322 511 aa19.85■□□□□ 0.77
CLN3-217ENST00000565354 CCSAPQ6IQ19 270 aaPredicted RBP19.85■□□□□ 0.77
CLN3-217ENST00000565354 ZNF467Q7Z7K2 595 aaPredicted RBP19.85■□□□□ 0.77
CLN3-217ENST00000565354 TRIM22Q8IYM9 498 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms