RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CCDC62Q6P9F0 684 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 C16orf59Q7L2K0 433 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 MCF2L2Q86YR7 1114 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 SCFD2Q8WU76 684 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 RMDN3Q96TC7 470 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 MPHOSPH6Q99547 160 aaKnown RBP12.6□□□□□ -0.39
VPS39-208ENST00000564994 ESYT1Q9BSJ8 1104 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 AMNQ9BXJ7 453 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 PPP1R12CQ9BZL4 782 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 TRPV6Q9H1D0 765 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 RIOX1Q9H6W3 641 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 GPHNQ9NQX3 736 aaPredicted RBP12.6□□□□□ -0.39
VPS39-208ENST00000564994 A0A0C4DFX4 3053 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 UMODL1Q5DID0 1318 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 SCN5AQ14524 2016 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 UNC80Q8N2C7 3258 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 ERICH2A1L162 156 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 NKRFO15226 690 aaKnown RBP eCLIP12.59□□□□□ -0.39
VPS39-208ENST00000564994 B4GALT4O60513 344 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 MYL3P08590 195 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 TXNP10599 105 aaKnown RBP12.59□□□□□ -0.39
VPS39-208ENST00000564994 CSF2RAP15509 400 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 EIF2AK2P19525 551 aaKnown RBP12.59□□□□□ -0.39
VPS39-208ENST00000564994 CYP2C18P33260 490 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 CPT1AP50416 773 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 HSD17B4P51659 736 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 TMEM67Q5HYA8 995 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 HOMER1Q86YM7 354 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 NSUN6Q8TEA1 469 aaKnown RBP12.59□□□□□ -0.39
VPS39-208ENST00000564994 PPP1R13LQ8WUF5 828 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 RNPC3Q96LT9 517 aaKnown RBP12.59□□□□□ -0.39
VPS39-208ENST00000564994 FAM161BQ96MY7 647 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 GUCD1Q96NT3 240 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 PIGSQ96S52 555 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.59□□□□□ -0.39
VPS39-208ENST00000564994 POLR3EQ9NVU0 708 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 GBF1Q92538 1859 aa12.59□□□□□ -0.39
VPS39-208ENST00000564994 TRIP12Q14669 1992 aaPredicted RBP12.58□□□□□ -0.4
VPS39-208ENST00000564994 A6NJR5 290 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 B4DLN1 442 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 SLC27A2O14975 620 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 MRPL12P52815 198 aaKnown RBP12.58□□□□□ -0.4
VPS39-208ENST00000564994 SMAD3P84022 425 aaKnown RBP12.58□□□□□ -0.4
VPS39-208ENST00000564994 TTLL4Q14679 1199 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 SART3Q15020 963 aaKnown RBP12.58□□□□□ -0.4
VPS39-208ENST00000564994 LY6KQ17RY6 165 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 TMEM240Q5SV17 173 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 ARHGEF16Q5VV41 709 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 SEPT14Q6ZU15 432 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 CENPQQ7L2Z9 268 aaPredicted RBP12.58□□□□□ -0.4
VPS39-208ENST00000564994 IWS1Q96ST2 819 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 MYL10Q9BUA6 226 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 ALDH8A1Q9H2A2 487 aaPredicted RBP12.58□□□□□ -0.4
VPS39-208ENST00000564994 LY9Q9HBG7 655 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 PXMP2Q9NR77 195 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 STXBP5LQ9Y2K9 1186 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 PCDHA1Q9Y5I3 950 aa12.58□□□□□ -0.4
VPS39-208ENST00000564994 PRC1O43663 620 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 NR3C2P08235 984 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 ACRP10323 421 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 HOXA13P31271 388 aaPredicted RBP12.57□□□□□ -0.4
VPS39-208ENST00000564994 ARHGAP1Q07960 439 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 PPIGQ13427 754 aaKnown RBP eCLIP12.57□□□□□ -0.49e-6■■■■□ 22.2
VPS39-208ENST00000564994 NECTIN1Q15223 517 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 STXBP2Q15833 593 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 BMP2KLQ5H9B9 411 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 CATIPQ7Z7H3 387 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 TMEM199Q8N511 208 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 MTG1Q9BT17 334 aaPredicted RBP12.57□□□□□ -0.4
VPS39-208ENST00000564994 NOC4LQ9BVI4 516 aaKnown RBP12.57□□□□□ -0.4
VPS39-208ENST00000564994 SEZ6LQ9BYH1 1024 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 WNT8AQ9H1J5 351 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 TTYH1Q9H313 450 aaPredicted RBP12.57□□□□□ -0.4
VPS39-208ENST00000564994 HIPK3Q9H422 1215 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 TRMT13Q9NUP7 481 aaKnown RBP12.57□□□□□ -0.4
VPS39-208ENST00000564994 MYO9BQ13459 2157 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 CHD9Q3L8U1 2897 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 DOCK5Q9H7D0 1870 aa12.57□□□□□ -0.4
VPS39-208ENST00000564994 PNMA6FA0A0J9YX94 578 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 SH2B2O14492 632 aaPredicted RBP12.56□□□□□ -0.4
VPS39-208ENST00000564994 EIF3JO75822 258 aaKnown RBP12.56□□□□□ -0.4
VPS39-208ENST00000564994 RGS20O76081 388 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 CCL23P55773 120 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 NBPF20Q3BBV1 942 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 ZNF697Q5TEC3 545 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 RASIP1Q5U651 963 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 CREB3L3Q68CJ9 461 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 ZNF365Q70YC5 407 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 ZNF654Q8IZM8 581 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 IL31RAQ8NI17 732 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 AFG1LQ8WV93 481 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 PIBF1Q8WXW3 757 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 VWCEQ96DN2 955 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 PDCD2LQ9BRP1 358 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 ANO2Q9NQ90 1003 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 MAP3K20Q9NYL2 800 aaKnown RBP12.56□□□□□ -0.4
VPS39-208ENST00000564994 DDX41Q9UJV9 622 aaKnown RBP12.56□□□□□ -0.4
VPS39-208ENST00000564994 TANC1Q9C0D5 1861 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 TET1Q8NFU7 2136 aa12.56□□□□□ -0.4
VPS39-208ENST00000564994 PRUNE2Q8WUY3 3088 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms