RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 BRDTQ58F21 947 aaPredicted RBP20.55■□□□□ 0.88
NME3-205ENST00000563854 SLC43A3Q8NBI5 491 aa20.55■□□□□ 0.88
NME3-205ENST00000563854 PIBF1Q8WXW3 757 aa20.55■□□□□ 0.88
NME3-205ENST00000563854 TRPV6Q9H1D0 765 aa20.55■□□□□ 0.88
NME3-205ENST00000563854 LAMA2P24043 3122 aaKnown RBP20.55■□□□□ 0.88
NME3-205ENST00000563854 NKRFO15226 690 aaKnown RBP eCLIP20.54■□□□□ 0.88
NME3-205ENST00000563854 B4GALT4O60513 344 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 PPP1R11O60927 126 aaPredicted RBP20.54■□□□□ 0.88
NME3-205ENST00000563854 ARIH2O95376 493 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 CD4P01730 458 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 CSF2RAP15509 400 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 ANTXR2P58335 489 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 CHMP4BP1P59074 171 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 TTLL4Q14679 1199 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 FAM47CQ5HY64 1035 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 CATIPQ7Z7H3 387 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 MB21D2Q8IYB1 491 aaPredicted RBP20.54■□□□□ 0.88
NME3-205ENST00000563854 TMEM199Q8N511 208 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 PPP1R13LQ8WUF5 828 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 PIGSQ96S52 555 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 ESYT1Q9BSJ8 1104 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 HIPK3Q9H422 1215 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 PCDHA1Q9Y5I3 950 aa20.54■□□□□ 0.88
NME3-205ENST00000563854 ACRP10323 421 aa20.53■□□□□ 0.88
NME3-205ENST00000563854 PURAQ00577 322 aaKnown RBP20.53■□□□□ 0.88
NME3-205ENST00000563854 STXBP2Q15833 593 aa20.53■□□□□ 0.88
NME3-205ENST00000563854 CASC1Q6TDU7 716 aa20.53■□□□□ 0.88
NME3-205ENST00000563854 CENPQQ7L2Z9 268 aaPredicted RBP20.53■□□□□ 0.88
NME3-205ENST00000563854 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.53■□□□□ 0.888e-10■□□□□ 9.4
NME3-205ENST00000563854 MTG1Q9BT17 334 aaPredicted RBP20.53■□□□□ 0.88
NME3-205ENST00000563854 MYL10Q9BUA6 226 aa20.53■□□□□ 0.88
NME3-205ENST00000563854 ANO2Q9NQ90 1003 aa20.53■□□□□ 0.88
NME3-205ENST00000563854 UMODL1Q5DID0 1318 aa20.53■□□□□ 0.88
NME3-205ENST00000563854 OPLAHO14841 1288 aa20.52■□□□□ 0.88
NME3-205ENST00000563854 HOXA13P31271 388 aaPredicted RBP20.52■□□□□ 0.88
NME3-205ENST00000563854 SMAD3P84022 425 aaKnown RBP20.52■□□□□ 0.88
NME3-205ENST00000563854 LY6KQ17RY6 165 aa20.52■□□□□ 0.88
NME3-205ENST00000563854 SLC35G1Q2M3R5 365 aa20.52■□□□□ 0.88
NME3-205ENST00000563854 MTMR8Q96EF0 704 aa20.52■□□□□ 0.88
NME3-205ENST00000563854 MAF1Q9H063 256 aa20.52■□□□□ 0.88
NME3-205ENST00000563854 LSG1Q9H089 658 aaKnown RBP20.52■□□□□ 0.88
NME3-205ENST00000563854 PXMP2Q9NR77 195 aa20.52■□□□□ 0.88
NME3-205ENST00000563854 PRC1O43663 620 aa20.51■□□□□ 0.87
NME3-205ENST00000563854 CCL23P55773 120 aa20.51■□□□□ 0.87
NME3-205ENST00000563854 TROAPQ12815 778 aa20.51■□□□□ 0.87
NME3-205ENST00000563854 FAM109BQ6ICB4 259 aaPredicted RBP20.51■□□□□ 0.87
NME3-205ENST00000563854 NFXL1Q6ZNB6 911 aa20.51■□□□□ 0.87
NME3-205ENST00000563854 IWS1Q96ST2 819 aa20.51■□□□□ 0.87
NME3-205ENST00000563854 ALDH8A1Q9H2A2 487 aaPredicted RBP20.51■□□□□ 0.87
NME3-205ENST00000563854 TRMT13Q9NUP7 481 aaKnown RBP20.51■□□□□ 0.87
NME3-205ENST00000563854 STXBP5LQ9Y2K9 1186 aa20.51■□□□□ 0.87
NME3-205ENST00000563854 COL6A3P12111 3177 aa20.51■□□□□ 0.87
NME3-205ENST00000563854 SLC27A2O14975 620 aa20.5■□□□□ 0.87
NME3-205ENST00000563854 CYTH3O43739 400 aa20.5■□□□□ 0.87
NME3-205ENST00000563854 MYCLP12524 364 aaPredicted RBP20.5■□□□□ 0.87
NME3-205ENST00000563854 HSD17B4P51659 736 aa20.5■□□□□ 0.87
NME3-205ENST00000563854 ZNF654Q8IZM8 581 aa20.5■□□□□ 0.87
NME3-205ENST00000563854 SLC17A8Q8NDX2 589 aa20.5■□□□□ 0.87
NME3-205ENST00000563854 IGDCC4Q8TDY8 1250 aa20.5■□□□□ 0.87
NME3-205ENST00000563854 AFG1LQ8WV93 481 aa20.5■□□□□ 0.87
NME3-205ENST00000563854 GUCD1Q96NT3 240 aa20.5■□□□□ 0.87
NME3-205ENST00000563854 SEZ6LQ9BYH1 1024 aa20.5■□□□□ 0.87
NME3-205ENST00000563854 RIOX1Q9H6W3 641 aa20.5■□□□□ 0.87
NME3-205ENST00000563854 LY9Q9HBG7 655 aa20.5■□□□□ 0.87
NME3-205ENST00000563854 GH1P01241 217 aa20.49■□□□□ 0.87
NME3-205ENST00000563854 NR3C2P08235 984 aa20.49■□□□□ 0.87
NME3-205ENST00000563854 CYP2C9P11712 490 aa20.49■□□□□ 0.87
NME3-205ENST00000563854 NBPF20Q3BBV1 942 aa20.49■□□□□ 0.87
NME3-205ENST00000563854 TMEM240Q5SV17 173 aa20.49■□□□□ 0.87
NME3-205ENST00000563854 CCDC62Q6P9F0 684 aa20.49■□□□□ 0.87
NME3-205ENST00000563854 PSRC1Q6PGN9 363 aaPredicted RBP20.49■□□□□ 0.87
NME3-205ENST00000563854 ZNF365Q70YC5 407 aa20.49■□□□□ 0.87
NME3-205ENST00000563854 FCHSD1Q86WN1 690 aa20.49■□□□□ 0.87
NME3-205ENST00000563854 CTCFLQ8NI51 663 aaPredicted RBP20.49■□□□□ 0.87
NME3-205ENST00000563854 NOC4LQ9BVI4 516 aaKnown RBP20.49■□□□□ 0.87
NME3-205ENST00000563854 MRVI1Q9Y6F6 885 aa20.49■□□□□ 0.87
NME3-205ENST00000563854 PNMA6FA0A0J9YX94 578 aa20.48■□□□□ 0.87
NME3-205ENST00000563854 CCDC69A6NI79 296 aa20.48■□□□□ 0.87
NME3-205ENST00000563854 A6NJR5 290 aa20.48■□□□□ 0.87
NME3-205ENST00000563854 SORBS3O60504 671 aa20.48■□□□□ 0.87
NME3-205ENST00000563854 KPNA6O60684 536 aa20.48■□□□□ 0.87
NME3-205ENST00000563854 MCM5P33992 734 aa20.48■□□□□ 0.87
NME3-205ENST00000563854 TRAF1Q13077 416 aa20.48■□□□□ 0.87
NME3-205ENST00000563854 BMP2KLQ5H9B9 411 aa20.48■□□□□ 0.87
NME3-205ENST00000563854 CREB3L3Q68CJ9 461 aa20.48■□□□□ 0.87
NME3-205ENST00000563854 C16orf59Q7L2K0 433 aa20.48■□□□□ 0.87
NME3-205ENST00000563854 IL23AQ9NPF7 189 aa20.48■□□□□ 0.87
NME3-205ENST00000563854 GCOM1H8Y6P7 765 aaPredicted RBP20.47■□□□□ 0.87
NME3-205ENST00000563854 EIF3JO75822 258 aaKnown RBP20.47■□□□□ 0.87
NME3-205ENST00000563854 DDAH1O94760 285 aa20.47■□□□□ 0.87
NME3-205ENST00000563854 MMP3P08254 477 aa20.47■□□□□ 0.87
NME3-205ENST00000563854 SUPT20HL2P0C7V6 817 aa20.47■□□□□ 0.87
NME3-205ENST00000563854 POLR2MP0CAP2 368 aa20.47■□□□□ 0.87
NME3-205ENST00000563854 RXRAP19793 462 aa20.47■□□□□ 0.87
NME3-205ENST00000563854 KIF5BP33176 963 aa20.47■□□□□ 0.87
NME3-205ENST00000563854 ARHGAP1Q07960 439 aa20.47■□□□□ 0.87
NME3-205ENST00000563854 COL9A3Q14050 684 aaPredicted RBP20.47■□□□□ 0.87
NME3-205ENST00000563854 RAB11FIP4Q86YS3 637 aa20.47■□□□□ 0.87
NME3-205ENST00000563854 SCLYQ96I15 445 aa20.47■□□□□ 0.87
NME3-205ENST00000563854 ZFP91Q96JP5 570 aaPredicted RBP20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms