RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 SLC41A1Q8IVJ1 513 aa6.2□□□□□ -1.42
VPS35P1-201ENST00000563400 OR8H2Q8N162 312 aa6.2□□□□□ -1.42
VPS35P1-201ENST00000563400 IL17REQ8NFR9 667 aa6.2□□□□□ -1.42
VPS35P1-201ENST00000563400 IPO9Q96P70 1041 aaKnown RBP6.2□□□□□ -1.42
VPS35P1-201ENST00000563400 CRB3Q9BUF7 120 aa6.2□□□□□ -1.42
VPS35P1-201ENST00000563400 NDOR1Q9UHB4 597 aa6.2□□□□□ -1.42
VPS35P1-201ENST00000563400 DNM3Q9UQ16 869 aa6.2□□□□□ -1.42
VPS35P1-201ENST00000563400 RAB3GAP2Q9H2M9 1393 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 CROCC2H7BZ55 1655 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 BCORL1Q5H9F3 1711 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 EPXP11678 715 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 ZKSCAN1P17029 563 aaPredicted RBP6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 IREB2P48200 963 aaKnown RBP6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 RXRGP48443 463 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 CCT5P48643 541 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 CDC37Q16543 378 aaPredicted RBP6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 SV2CQ496J9 727 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 WDR45BQ5MNZ6 344 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 IER5Q5VY09 327 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 FAM180BQ6P0A1 224 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 BTLAQ7Z6A9 289 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 SCUBE1Q8IWY4 988 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 KIAA1958Q8N8K9 716 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 RSPH1Q8WYR4 309 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 CDK5RAP3Q96JB5 506 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 TTC14Q96N46 770 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 LGR4Q9BXB1 951 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 RETREG1Q9H6L5 497 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 RSAD1Q9HA92 442 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 SLC52A2Q9HAB3 445 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 ISY1Q9ULR0 285 aaKnown RBP6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 KCNH4Q9UQ05 1017 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 GIT1Q9Y2X7 761 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 SLC4A7Q9Y6M7 1214 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 LMTK2Q8IWU2 1503 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 ABCA6Q8N139 1617 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 MROH2AA6NES4 1674 aa6.19□□□□□ -1.42
VPS35P1-201ENST00000563400 RPN1P04843 607 aaKnown RBP6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 BMP6P22004 513 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 ADD2P35612 726 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 CHKAP35790 457 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 GRIA2P42262 883 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 RECQLP46063 649 aaPredicted RBP6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 KCNQ4P56696 695 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 ERVK-21P61565 698 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 PTPN11Q06124 597 aaPredicted RBP6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 TBX2Q13207 712 aaPredicted RBP6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 PDE1CQ14123 709 aaPredicted RBP6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 IQSEC1Q6DN90 963 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 MZT2BQ6NZ67 158 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 CCT6BQ92526 530 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 SCLYQ96I15 445 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 TBATAQ96M53 351 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 ZKSCAN3Q9BRR0 538 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 GSX2Q9BZM3 304 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 SLC13A1Q9BZW2 595 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 KMT5AQ9NQR1 393 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 SMC4Q9NTJ3 1288 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 TRMT13Q9NUP7 481 aaKnown RBP6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 RRN3Q9NYV6 651 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 GPN3Q9UHW5 284 aaPredicted RBP6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 GPR52Q9Y2T5 361 aa6.18□□□□□ -1.42
VPS35P1-201ENST00000563400 ANKRD30BQ9BXX2 1392 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 SHISA8B8ZZ34 492 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 ZEB2O60315 1214 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 SIN3BO75182 1162 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 PYGLP06737 847 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 C6orf222P0C671 652 aaPredicted RBP6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 RHCEP18577 417 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 CEBPAP49715 358 aaPredicted RBP6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 PCBP4P57723 403 aaKnown RBP6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 PPP2R2AP63151 447 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 RHDQ02161 417 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 TYRO3Q06418 890 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 SPEM2Q0P670 501 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 CFAP100Q494V2 611 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 CCDC92Q53HC0 331 aaPredicted RBP6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 TRIM61Q5EBN2 209 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 TSHZ3Q63HK5 1081 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 B3GNT9Q6UX72 402 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 ALYREFQ86V81 257 aaKnown RBP6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 NLRP13Q86W25 1043 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 ACRBPQ8NEB7 543 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 TMEM40Q8WWA1 233 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 HSPBAP1Q96EW2 488 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 BTBD6Q96KE9 485 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 SGCZQ96LD1 299 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 AIFM3Q96NN9 605 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 AARSD1Q9BTE6 412 aaKnown RBP6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 MENTQ9BUN1 341 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 CWC25Q9NXE8 425 aaPredicted RBP6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 APOBEC2Q9Y235 224 aaKnown RBP6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 PTPN22Q9Y2R2 807 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 FER1L4A9Z1Z3 1794 aa6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 RNF17Q9BXT8 1623 aaKnown RBP6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 PRDM15P57071 1507 aaPredicted RBP6.17□□□□□ -1.42
VPS35P1-201ENST00000563400 CNTNAP5Q8WYK1 1306 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms