RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 AATFQ9NY61 560 aaKnown RBP eCLIP12.08□□□□□ -0.48
USP3-206ENST00000558157 LIMA1Q9UHB6 759 aaKnown RBP12.08□□□□□ -0.48
USP3-206ENST00000558157 SLC4A4Q9Y6R1 1079 aa12.08□□□□□ -0.48
USP3-206ENST00000558157 ARFGEF1Q9Y6D6 1849 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 PRLRP16471 622 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 ARFGAP2Q8N6H7 521 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 TATDN2Q93075 761 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 CENPHQ9H3R5 247 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 SLC24A3Q9HC58 644 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 BCS1LQ9Y276 419 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 KLF18A0A0U1RQI7 1052 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 GSG1L2A8MUP6 293 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 GNAT2P19087 354 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 GBP2P32456 591 aaPredicted RBP12.07□□□□□ -0.48
USP3-206ENST00000558157 RWDD2BP57060 319 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 HAND2P61296 217 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 GSTO1P78417 241 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 CUL4BQ13620 913 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 GLE1Q53GS7 698 aaKnown RBP12.07□□□□□ -0.48
USP3-206ENST00000558157 LACTB2Q53H82 288 aaPredicted RBP12.07□□□□□ -0.48
USP3-206ENST00000558157 CRELD2Q6UXH1 353 aaPredicted RBP12.07□□□□□ -0.48
USP3-206ENST00000558157 TIAM2Q8IVF5 1701 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 SDR42E1Q8WUS8 393 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 GDAP1L1Q96MZ0 367 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 NUP88Q99567 741 aaPredicted RBP12.07□□□□□ -0.48
USP3-206ENST00000558157 ETAA1Q9NY74 926 aa12.07□□□□□ -0.48
USP3-206ENST00000558157 HMGB1P1B2RPK0 211 aaPredicted RBP12.06□□□□□ -0.48
USP3-206ENST00000558157 PTPREP23469 700 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 MDH1P40925 334 aaKnown RBP12.06□□□□□ -0.48
USP3-206ENST00000558157 INHBEP58166 350 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 IFT88Q13099 833 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 TMED8Q6PL24 325 aaPredicted RBP12.06□□□□□ -0.48
USP3-206ENST00000558157 IFNL3Q8IZI9 196 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 ARL8AQ96BM9 186 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 FAM210AQ96ND0 272 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 ALG1Q9BT22 464 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 BAZ2AQ9UIF9 1905 aaKnown RBP12.06□□□□□ -0.48
USP3-206ENST00000558157 YDJCA8MPS7 323 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 F8W031 263 aaPredicted RBP12.06□□□□□ -0.48
USP3-206ENST00000558157 FOXN1O15353 648 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 MGRN1O60291 552 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 NR1D1P20393 614 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 KRT9P35527 623 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 CCNHP51946 323 aaPredicted RBP12.06□□□□□ -0.48
USP3-206ENST00000558157 NAA25Q14CX7 972 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 RBBP5Q15291 538 aaKnown RBP12.06□□□□□ -0.48
USP3-206ENST00000558157 IMMTQ16891 758 aaKnown RBP12.06□□□□□ -0.48
USP3-206ENST00000558157 CCDC122Q5T0U0 273 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 KRT40Q6A162 431 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.06□□□□□ -0.48
USP3-206ENST00000558157 FAM228AQ86W67 206 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 GSPT2Q8IYD1 628 aaKnown RBP12.06□□□□□ -0.48
USP3-206ENST00000558157 MREGQ8N565 214 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 CCHCR1Q8TD31 782 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 NAPBQ9H115 298 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 RABEP2Q9H5N1 569 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 HDAC6Q9UBN7 1215 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 TPX2Q9ULW0 747 aaKnown RBP12.06□□□□□ -0.48
USP3-206ENST00000558157 REXO2Q9Y3B8 237 aaKnown RBP12.06□□□□□ -0.48
USP3-206ENST00000558157 CDK5RAP2Q96SN8 1893 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 LAMB1P07942 1786 aa12.06□□□□□ -0.48
USP3-206ENST00000558157 NAV1Q8NEY1 1877 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 SH2B2O14492 632 aaPredicted RBP12.05□□□□□ -0.48
USP3-206ENST00000558157 POLR2DO15514 142 aaKnown RBP12.05□□□□□ -0.48
USP3-206ENST00000558157 PPFIA3O75145 1194 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 ZMYND10O75800 440 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 TRIM29Q14134 588 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 ALX1Q15699 326 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 SPECC1Q5M775 1068 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 LARGE2Q8N3Y3 721 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 OR8K1Q8NGG5 319 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 RNPC3Q96LT9 517 aaKnown RBP12.05□□□□□ -0.48
USP3-206ENST00000558157 TSGA10Q9BZW7 698 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 ENC1O14682 589 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 ACTN4O43707 911 aaKnown RBP12.05□□□□□ -0.48
USP3-206ENST00000558157 GHRP10912 638 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 GCKP35557 465 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 VAV2P52735 878 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 TSR1Q2NL82 804 aaKnown RBP12.05□□□□□ -0.48
USP3-206ENST00000558157 DACT2Q5SW24 774 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 STRIP1Q5VSL9 837 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 TTC19Q6DKK2 380 aaPredicted RBP12.05□□□□□ -0.48
USP3-206ENST00000558157 IQCKQ8N0W5 287 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 ITFG2Q969R8 447 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 CCDC47Q96A33 483 aaKnown RBP12.05□□□□□ -0.48
USP3-206ENST00000558157 GSDMAQ96QA5 445 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 PURBQ96QR8 312 aaKnown RBP12.05□□□□□ -0.48
USP3-206ENST00000558157 STIM2Q9P246 746 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 SERTAD1Q9UHV2 236 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.05□□□□□ -0.48
USP3-206ENST00000558157 SUGT1Q9Y2Z0 365 aa12.05□□□□□ -0.48
USP3-206ENST00000558157 USP17L3A6NCW0 530 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 USP17L4A6NCW7 530 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 NFKBIEO00221 500 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 LIN7AO14910 233 aaPredicted RBP12.04□□□□□ -0.48
USP3-206ENST00000558157 N4BP3O15049 544 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 PRC1O43663 620 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 DNAJC8O75937 253 aaPredicted RBP12.04□□□□□ -0.48
USP3-206ENST00000558157 LDHCP07864 332 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 IARSP41252 1262 aaKnown RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms