RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 SMAD4Q13485 552 aaKnown RBP4.72□□□□□ -1.65
VPS13C-205ENST00000558088 POMZP3Q6PJE2 187 aa4.72□□□□□ -1.65
VPS13C-205ENST00000558088 ETV3LQ6ZN32 361 aa4.72□□□□□ -1.65
VPS13C-205ENST00000558088 C19orf47Q8N9M1 422 aaKnown RBP4.72□□□□□ -1.65
VPS13C-205ENST00000558088 ADAMTS17Q8TE56 1095 aa4.72□□□□□ -1.65
VPS13C-205ENST00000558088 RCC1LQ96I51 464 aaKnown RBP4.72□□□□□ -1.65
VPS13C-205ENST00000558088 LOXL4Q96JB6 756 aa4.72□□□□□ -1.65
VPS13C-205ENST00000558088 NOX5Q96PH1 765 aa4.72□□□□□ -1.65
VPS13C-205ENST00000558088 BACH2Q9BYV9 841 aa4.72□□□□□ -1.65
VPS13C-205ENST00000558088 DUSP10Q9Y6W6 482 aa4.72□□□□□ -1.65
VPS13C-205ENST00000558088 LTBP3Q9NS15 1303 aa4.72□□□□□ -1.65
VPS13C-205ENST00000558088 PLATP00750 562 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 FUCA1P04066 466 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 NTRK1P04629 796 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 NAT2P11245 290 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 ZNF16P17020 682 aaPredicted RBP4.71□□□□□ -1.66
VPS13C-205ENST00000558088 ADAM17P78536 824 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 RGL3Q3MIN7 710 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 ZNF654Q8IZM8 581 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 LGI4Q8N135 537 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 ARHGEF39Q8N4T4 335 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 TTC9BQ8N6N2 239 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 TTLL6Q8N841 843 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 CHST13Q8NET6 341 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 SAMD11Q96NU1 681 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 MTA3Q9BTC8 594 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 MCMBPQ9BTE3 642 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 FBLN5Q9UBX5 448 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 PCDHB10Q9UN67 800 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 ZNF536O15090 1300 aa4.71□□□□□ -1.66
VPS13C-205ENST00000558088 C7orf72A4D263 438 aa4.7□□□□□ -1.66
VPS13C-205ENST00000558088 RPL13P26373 211 aaKnown RBP4.7□□□□□ -1.66
VPS13C-205ENST00000558088 PPP2R5EQ16537 467 aa4.7□□□□□ -1.66
VPS13C-205ENST00000558088 FAM26FQ5R3K3 315 aa4.7□□□□□ -1.66
VPS13C-205ENST00000558088 CPZQ66K79 652 aa4.7□□□□□ -1.66
VPS13C-205ENST00000558088 LINC00482Q8N8I6 264 aa4.7□□□□□ -1.66
VPS13C-205ENST00000558088 KYQ8NBH2 561 aa4.7□□□□□ -1.66
VPS13C-205ENST00000558088 YIPF4Q9BSR8 244 aa4.7□□□□□ -1.66
VPS13C-205ENST00000558088 NGRNQ9NPE2 291 aaKnown RBP4.7□□□□□ -1.66
VPS13C-205ENST00000558088 GINM1Q9NU53 330 aa4.7□□□□□ -1.66
VPS13C-205ENST00000558088 SPATA6Q9NWH7 488 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-205ENST00000558088 MARCH2Q9P0N8 246 aa4.7□□□□□ -1.66
VPS13C-205ENST00000558088 SRRDQ9UH36 339 aa4.7□□□□□ -1.66
VPS13C-205ENST00000558088 DDX41Q9UJV9 622 aaKnown RBP4.7□□□□□ -1.66
VPS13C-205ENST00000558088 AKT3Q9Y243 479 aa4.7□□□□□ -1.66
VPS13C-205ENST00000558088 EFR3BQ9Y2G0 817 aa4.7□□□□□ -1.66
VPS13C-205ENST00000558088 A0A1W2PQH9 124 aa4.69□□□□□ -1.66
VPS13C-205ENST00000558088 ANKRD34BA5PLL1 514 aa4.69□□□□□ -1.66
VPS13C-205ENST00000558088 NOP56O00567 594 aaKnown RBP4.69□□□□□ -1.66
VPS13C-205ENST00000558088 C8BP07358 591 aa4.69□□□□□ -1.66
VPS13C-205ENST00000558088 THBS2P35442 1172 aa4.69□□□□□ -1.66
VPS13C-205ENST00000558088 ZXDAP98168 799 aa4.69□□□□□ -1.66
VPS13C-205ENST00000558088 PAK2Q13177 524 aa4.69□□□□□ -1.66
VPS13C-205ENST00000558088 LDLRAD1Q5T700 205 aa4.69□□□□□ -1.66
VPS13C-205ENST00000558088 GLB1LQ6UWU2 654 aa4.69□□□□□ -1.66
VPS13C-205ENST00000558088 CD300LDQ6UXZ3 194 aa4.69□□□□□ -1.66
VPS13C-205ENST00000558088 CPLX3Q8WVH0 158 aa4.69□□□□□ -1.66
VPS13C-205ENST00000558088 GORASP1Q9BQQ3 440 aa4.69□□□□□ -1.66
VPS13C-205ENST00000558088 C11orf84Q9BUA3 381 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-205ENST00000558088 BTG4Q9NY30 223 aa4.69□□□□□ -1.66
VPS13C-205ENST00000558088 CLEC1BQ9P126 229 aa4.69□□□□□ -1.66
VPS13C-205ENST00000558088 MROH6A6NGR9 719 aa4.68□□□□□ -1.66
VPS13C-205ENST00000558088 KCNH1O95259 989 aa4.68□□□□□ -1.66
VPS13C-205ENST00000558088 PLS3P13797 630 aa4.68□□□□□ -1.66
VPS13C-205ENST00000558088 TNFRSF1AP19438 455 aa4.68□□□□□ -1.66
VPS13C-205ENST00000558088 SOX9P48436 509 aa4.68□□□□□ -1.66
VPS13C-205ENST00000558088 GIPRP48546 466 aa4.68□□□□□ -1.66
VPS13C-205ENST00000558088 SURF1Q15526 300 aa4.68□□□□□ -1.66
VPS13C-205ENST00000558088 KIAA1211LQ6NV74 962 aa4.68□□□□□ -1.66
VPS13C-205ENST00000558088 PLEKHH3Q7Z736 793 aa4.68□□□□□ -1.66
VPS13C-205ENST00000558088 SEC14L1Q92503 715 aa4.68□□□□□ -1.66
VPS13C-205ENST00000558088 KISS1RQ969F8 398 aaPredicted RBP4.68□□□□□ -1.66
VPS13C-205ENST00000558088 GPRASP2Q96D09 838 aa4.68□□□□□ -1.66
VPS13C-205ENST00000558088 LCORQ96JN0 433 aaPredicted RBP4.68□□□□□ -1.66
VPS13C-205ENST00000558088 C8orf49Q96NF6 230 aa4.68□□□□□ -1.66
VPS13C-205ENST00000558088 RBM15Q96T37 977 aaKnown RBP eCLIP4.68□□□□□ -1.66
VPS13C-205ENST00000558088 SIT1Q9Y3P8 196 aa4.68□□□□□ -1.66
VPS13C-205ENST00000558088 C22orf46C9J442 243 aa4.67□□□□□ -1.66
VPS13C-205ENST00000558088 SCAMP3O14828 347 aaKnown RBP4.67□□□□□ -1.66
VPS13C-205ENST00000558088 PPP1R11O60927 126 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-205ENST00000558088 THBDP07204 575 aa4.67□□□□□ -1.66
VPS13C-205ENST00000558088 ZNF20P17024 532 aa4.67□□□□□ -1.66
VPS13C-205ENST00000558088 RACK1P63244 317 aaKnown RBP4.67□□□□□ -1.66
VPS13C-205ENST00000558088 SCRN1Q12765 414 aa4.67□□□□□ -1.66
VPS13C-205ENST00000558088 TBC1D10BQ4KMP7 808 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-205ENST00000558088 PRAMEF18Q5VWM3 479 aa4.67□□□□□ -1.66
VPS13C-205ENST00000558088 MCTP2Q6DN12 878 aa4.67□□□□□ -1.66
VPS13C-205ENST00000558088 IQCEQ6IPM2 695 aa4.67□□□□□ -1.66
VPS13C-205ENST00000558088 VHLLQ6RSH7 139 aa4.67□□□□□ -1.66
VPS13C-205ENST00000558088 MIB1Q86YT6 1006 aa4.67□□□□□ -1.66
VPS13C-205ENST00000558088 DVL3Q92997 716 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-205ENST00000558088 PPP1R14AQ96A00 147 aa4.67□□□□□ -1.66
VPS13C-205ENST00000558088 MMP19Q99542 508 aa4.67□□□□□ -1.66
VPS13C-205ENST00000558088 APBA2Q99767 749 aa4.67□□□□□ -1.66
VPS13C-205ENST00000558088 INVSQ9Y283 1065 aa4.67□□□□□ -1.66
VPS13C-205ENST00000558088 C1QTNF3-AMACRE9PGA6 284 aa4.66□□□□□ -1.66
VPS13C-205ENST00000558088 MATN3O15232 486 aa4.66□□□□□ -1.66
VPS13C-205ENST00000558088 MYO1BO43795 1136 aa4.66□□□□□ -1.66
VPS13C-205ENST00000558088 SLC6A11P48066 632 aa4.66□□□□□ -1.66
VPS13C-205ENST00000558088 RPL11P62913 178 aaKnown RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms