RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 MAD2L2Q9UI95 211 aa13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 TSKSQ9UJT2 592 aa13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 XIRP1Q702N8 1843 aaKnown RBP13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 ABCB11O95342 1321 aa13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 CXCR5P32302 372 aa13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 CRKLP46109 303 aaKnown RBP13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 MAN2A1Q16706 1144 aa13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 SUGP1Q8IWZ8 645 aaKnown RBP13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 TSEN2Q8NCE0 465 aaKnown RBP13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 KIAA0895Q8NCT3 520 aa13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 CALML4Q96GE6 196 aa13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 PSMB7Q99436 277 aa13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 EHD4Q9H223 541 aa13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 MCM9Q9NXL9 1143 aa13.11□□□□□ -0.31
VIPAS39-211ENST00000557658 GUCY2CP25092 1073 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 LIG3P49916 1009 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 MRPS25P82663 173 aaKnown RBP13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 TTMPQ5BVD1 217 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 RRAGAQ7L523 313 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 KRT25Q7Z3Z0 450 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 FBXO33Q7Z6M2 555 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 POTEDQ86YR6 584 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 IFT20Q8IY31 132 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 ARL8AQ96BM9 186 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 NOX5Q96PH1 765 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 BTG4Q9NY30 223 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 RNF14Q9UBS8 474 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 MINPP1Q9UNW1 487 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 LRRC53A6NM62 1247 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 EPHB6O15197 1021 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 NKRFO15226 690 aaKnown RBP eCLIP13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 CCNT1O60563 726 aaKnown RBP13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 APBA1Q02410 837 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 NONOQ15233 471 aaKnown RBP eCLIP13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 LETM2Q2VYF4 491 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 CFAP221Q4G0U5 840 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 RNF10Q8N5U6 811 aaKnown RBP13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 YY1AP1Q9H869 796 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 SLC39A2Q9NP94 309 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 IL17RBQ9NRM6 502 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 SMARCAL1Q9NZC9 954 aa13.1□□□□□ -0.31
VIPAS39-211ENST00000557658 CCDC88AQ3V6T2 1871 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 NCK2O43639 380 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 SV2BQ7L1I2 683 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 TLR10Q9BXR5 811 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 EDEM3Q9BZQ6 932 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 RBM12Q9NTZ6 932 aaKnown RBP13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 EHD2Q9NZN4 543 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 TAF1P21675 1872 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 CYTH3O43739 400 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 CLSTN1O94985 981 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 USP17L8P0C7I0 530 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 INPP5BP32019 993 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 ATP6V1AP38606 617 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 PDE4CQ08493 712 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 SF3B3Q15393 1217 aaKnown RBP13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 B4GALNT4Q76KP1 1039 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 CACNA2D4Q7Z3S7 1137 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 HPS3Q969F9 1004 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 ZIM3Q96PE6 472 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 LZTS2Q9BRK4 669 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 RABEP2Q9H5N1 569 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 SLAIN2Q9P270 581 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 ZNF652Q9Y2D9 606 aa13.09□□□□□ -0.31
VIPAS39-211ENST00000557658 SSU72P8A0A1W2PR75 194 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 TECP42680 631 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 NAPAP54920 295 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 NAP1L1P55209 391 aaKnown RBP13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 SLC35G1Q2M3R5 365 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 SLC4A8Q2Y0W8 1093 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 CFAP58Q5T655 872 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 TTC19Q6DKK2 380 aaPredicted RBP13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 PDXDC1Q6P996 788 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 UNC13DQ70J99 1090 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 BAP1Q92560 729 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 ZMYND12Q9H0C1 365 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 MKNK2Q9HBH9 465 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 MAST2Q6P0Q8 1798 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 PVALEFA0A1B0GWK0 134 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 NDUFAB1O14561 156 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 RASSF7Q02833 373 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 LRRC63Q05C16 580 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 PAK2Q13177 524 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 C12orf60Q5U649 245 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 KLHDC7AQ5VTJ3 777 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 NEK8Q86SG6 692 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 SPATS2Q86XZ4 545 aaKnown RBP13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 GUF1Q8N442 669 aaKnown RBP13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 ANKRD13CQ8N6S4 541 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 C6orf50Q9HD87 102 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 SALL4Q9UJQ4 1053 aa13.08□□□□□ -0.32
VIPAS39-211ENST00000557658 ATXN2Q99700 1313 aaKnown RBP13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 DOT1LQ8TEK3 1739 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 PALM3A6NDB9 673 aaPredicted RBP13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 TSPY3P0CV98 308 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 TSPY8P0CW00 308 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 GNA11P29992 359 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 PRDX5P30044 214 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 IRX3P78415 501 aaPredicted RBP13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 GFPT1Q06210 699 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms