RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 ZFYVE27Q5T4F4 411 aa6.91□□□□□ -1.3
SCFD1-217ENST00000555953 CARFQ8N187 725 aa6.91□□□□□ -1.3
SCFD1-217ENST00000555953 USP33Q8TEY7 942 aa6.91□□□□□ -1.3
SCFD1-217ENST00000555953 COPS5Q92905 334 aa6.91□□□□□ -1.3
SCFD1-217ENST00000555953 GPRC5CQ9NQ84 441 aa6.91□□□□□ -1.3
SCFD1-217ENST00000555953 USP40Q9NVE5 1235 aa6.91□□□□□ -1.3
SCFD1-217ENST00000555953 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.91□□□□□ -1.3
SCFD1-217ENST00000555953 EMC9Q9Y3B6 208 aa6.91□□□□□ -1.3
SCFD1-217ENST00000555953 FUCA1P04066 466 aa6.9□□□□□ -1.3
SCFD1-217ENST00000555953 NTRK1P04629 796 aa6.9□□□□□ -1.3
SCFD1-217ENST00000555953 PLP2Q04941 152 aa6.9□□□□□ -1.3
SCFD1-217ENST00000555953 CACNB2Q08289 660 aaPredicted RBP6.9□□□□□ -1.3
SCFD1-217ENST00000555953 SCRN1Q12765 414 aa6.9□□□□□ -1.3
SCFD1-217ENST00000555953 EFEMP1Q12805 493 aa6.9□□□□□ -1.3
SCFD1-217ENST00000555953 PLEKHO2Q8TD55 490 aa6.9□□□□□ -1.3
SCFD1-217ENST00000555953 DPF3Q92784 378 aa6.9□□□□□ -1.3
SCFD1-217ENST00000555953 MRRFQ96E11 262 aaKnown RBP6.9□□□□□ -1.3
SCFD1-217ENST00000555953 SEC16BQ96JE7 1060 aa6.9□□□□□ -1.3
SCFD1-217ENST00000555953 LGR4Q9BXB1 951 aa6.9□□□□□ -1.3
SCFD1-217ENST00000555953 SPATA6Q9NWH7 488 aaPredicted RBP6.9□□□□□ -1.3
SCFD1-217ENST00000555953 KIAA1522Q9P206 1035 aaPredicted RBP6.9□□□□□ -1.3
SCFD1-217ENST00000555953 NOBOXO60393 691 aa6.89□□□□□ -1.31
SCFD1-217ENST00000555953 ZBTB7AO95365 584 aa6.89□□□□□ -1.31
SCFD1-217ENST00000555953 DBX2Q6ZNG2 339 aa6.89□□□□□ -1.31
SCFD1-217ENST00000555953 FERMT3Q86UX7 667 aa6.89□□□□□ -1.31
SCFD1-217ENST00000555953 BVESQ8NE79 360 aa6.89□□□□□ -1.31
SCFD1-217ENST00000555953 APBA2Q99767 749 aa6.89□□□□□ -1.31
SCFD1-217ENST00000555953 ACBD3Q9H3P7 528 aa6.89□□□□□ -1.31
SCFD1-217ENST00000555953 THBDP07204 575 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 C8BP07358 591 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 ADRB1P08588 477 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 CYP4F3Q08477 520 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 INF2Q27J81 1249 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 UBXN11Q5T124 520 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 GTF2IRD2BQ6EKJ0 949 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 GTF2IRD2Q86UP8 949 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 GGNQ86UU5 652 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 ANAPC16Q96DE5 110 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 DDX11Q96FC9 970 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 MMP19Q99542 508 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 MARCH2Q9P0N8 246 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 DUSP10Q9Y6W6 482 aa6.88□□□□□ -1.31
SCFD1-217ENST00000555953 POMZP3Q6PJE2 187 aa6.87□□□□□ -1.31
SCFD1-217ENST00000555953 TRIM59Q8IWR1 403 aa6.87□□□□□ -1.31
SCFD1-217ENST00000555953 CRACR2BQ8N4Y2 399 aaPredicted RBP6.87□□□□□ -1.31
SCFD1-217ENST00000555953 DDX1Q92499 740 aaKnown RBP6.87□□□□□ -1.31
SCFD1-217ENST00000555953 ZBTB8AQ96BR9 441 aa6.87□□□□□ -1.31
SCFD1-217ENST00000555953 MRGPRX3Q96LB0 322 aa6.87□□□□□ -1.31
SCFD1-217ENST00000555953 SYT3Q9BQG1 590 aa6.87□□□□□ -1.31
SCFD1-217ENST00000555953 TGIF2Q9GZN2 237 aa6.87□□□□□ -1.31
SCFD1-217ENST00000555953 NTMQ9P121 344 aa6.87□□□□□ -1.31
SCFD1-217ENST00000555953 STRIP2Q9ULQ0 834 aa6.87□□□□□ -1.31
SCFD1-217ENST00000555953 UNCXA6NJT0 531 aa6.86□□□□□ -1.31
SCFD1-217ENST00000555953 SARSP49591 514 aaKnown RBP6.86□□□□□ -1.31
SCFD1-217ENST00000555953 ZNF143P52747 638 aaPredicted RBP6.86□□□□□ -1.31
SCFD1-217ENST00000555953 GJA9P57773 515 aa6.86□□□□□ -1.31
SCFD1-217ENST00000555953 SMAD4Q13485 552 aaKnown RBP6.86□□□□□ -1.31
SCFD1-217ENST00000555953 SPATS1Q496A3 300 aa6.86□□□□□ -1.31
SCFD1-217ENST00000555953 DCP2Q8IU60 420 aaKnown RBP6.86□□□□□ -1.31
SCFD1-217ENST00000555953 TEX2Q8IWB9 1127 aa6.86□□□□□ -1.31
SCFD1-217ENST00000555953 LINC00482Q8N8I6 264 aa6.86□□□□□ -1.31
SCFD1-217ENST00000555953 FRS2Q8WU20 508 aa6.86□□□□□ -1.31
SCFD1-217ENST00000555953 PPP1R14AQ96A00 147 aa6.86□□□□□ -1.31
SCFD1-217ENST00000555953 GORASP1Q9BQQ3 440 aa6.86□□□□□ -1.31
SCFD1-217ENST00000555953 LNPKQ9C0E8 428 aa6.86□□□□□ -1.31
SCFD1-217ENST00000555953 BTG4Q9NY30 223 aa6.86□□□□□ -1.31
SCFD1-217ENST00000555953 INPP5FQ9Y2H2 1132 aa6.86□□□□□ -1.31
SCFD1-217ENST00000555953 NOP56O00567 594 aaKnown RBP6.85□□□□□ -1.31
SCFD1-217ENST00000555953 CYP2C8P10632 490 aa6.85□□□□□ -1.31
SCFD1-217ENST00000555953 NAT2P11245 290 aa6.85□□□□□ -1.31
SCFD1-217ENST00000555953 CNR2P34972 360 aa6.85□□□□□ -1.31
SCFD1-217ENST00000555953 NCAPHQ15003 741 aa6.85□□□□□ -1.31
SCFD1-217ENST00000555953 ZNF761Q86XN6 746 aaPredicted RBP6.85□□□□□ -1.31
SCFD1-217ENST00000555953 NPLOC4Q8TAT6 608 aa6.85□□□□□ -1.31
SCFD1-217ENST00000555953 NKX2-4Q9H2Z4 354 aa6.85□□□□□ -1.31
SCFD1-217ENST00000555953 CYP26B1Q9NR63 512 aa6.85□□□□□ -1.31
SCFD1-217ENST00000555953 C22orf46C9J442 243 aa6.84□□□□□ -1.31
SCFD1-217ENST00000555953 SGSM2O43147 1006 aa6.84□□□□□ -1.31
SCFD1-217ENST00000555953 TBX1O43435 398 aa6.84□□□□□ -1.31
SCFD1-217ENST00000555953 ETV3LQ6ZN32 361 aa6.84□□□□□ -1.31
SCFD1-217ENST00000555953 MIB1Q86YT6 1006 aa6.84□□□□□ -1.31
SCFD1-217ENST00000555953 FAM26EQ8N5C1 309 aa6.84□□□□□ -1.31
SCFD1-217ENST00000555953 AP5M1Q9H0R1 490 aa6.84□□□□□ -1.31
SCFD1-217ENST00000555953 CCSER2Q9H7U1 834 aa6.84□□□□□ -1.31
SCFD1-217ENST00000555953 K7ESM1 405 aa6.83□□□□□ -1.32
SCFD1-217ENST00000555953 ARNTLO00327 626 aa6.83□□□□□ -1.32
SCFD1-217ENST00000555953 FPR2P25090 351 aa6.83□□□□□ -1.32
SCFD1-217ENST00000555953 RBM10P98175 930 aaKnown RBP6.83□□□□□ -1.32
SCFD1-217ENST00000555953 HHIPL2Q6UWX4 724 aa6.83□□□□□ -1.32
SCFD1-217ENST00000555953 TTLL7Q6ZT98 887 aa6.83□□□□□ -1.32
SCFD1-217ENST00000555953 CCDC103Q8IW40 242 aa6.83□□□□□ -1.32
SCFD1-217ENST00000555953 ADAMTS17Q8TE56 1095 aa6.83□□□□□ -1.32
SCFD1-217ENST00000555953 BTN2A2Q8WVV5 523 aa6.83□□□□□ -1.32
SCFD1-217ENST00000555953 C11orf84Q9BUA3 381 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-217ENST00000555953 CNOT11Q9UKZ1 510 aaKnown RBP6.83□□□□□ -1.32
SCFD1-217ENST00000555953 SMAD7O15105 426 aaKnown RBP6.82□□□□□ -1.32
SCFD1-217ENST00000555953 SMARCA5O60264 1052 aaPredicted RBP6.82□□□□□ -1.32
SCFD1-217ENST00000555953 ATF4P18848 351 aaPredicted RBP6.82□□□□□ -1.32
SCFD1-217ENST00000555953 THBS2P35442 1172 aa6.82□□□□□ -1.32
SCFD1-217ENST00000555953 C6orf15Q6UXA7 325 aaPredicted RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms