RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 TCRBV16S1A1N1A0A5B0 115 aa8.15□□□□□ -1.1
LINC00643-204ENST00000555934 KCNQ2O43526 872 aa8.15□□□□□ -1.1
LINC00643-204ENST00000555934 MYO1BO43795 1136 aa8.15□□□□□ -1.1
LINC00643-204ENST00000555934 PDE8AO60658 829 aa8.15□□□□□ -1.1
LINC00643-204ENST00000555934 CNGA1P29973 690 aa8.15□□□□□ -1.1
LINC00643-204ENST00000555934 TRHRP34981 398 aaPredicted RBP8.15□□□□□ -1.1
LINC00643-204ENST00000555934 GALK1P51570 392 aa8.15□□□□□ -1.1
LINC00643-204ENST00000555934 SLC23A3Q6PIS1 610 aa8.15□□□□□ -1.1
LINC00643-204ENST00000555934 RSPO2Q6UXX9 243 aaPredicted RBP8.15□□□□□ -1.1
LINC00643-204ENST00000555934 LBX2Q6XYB7 198 aa8.15□□□□□ -1.1
LINC00643-204ENST00000555934 SLCO6A1Q86UG4 719 aa8.15□□□□□ -1.1
LINC00643-204ENST00000555934 DPF3Q92784 378 aa8.15□□□□□ -1.1
LINC00643-204ENST00000555934 C19orf44Q9H6X5 657 aa8.15□□□□□ -1.1
LINC00643-204ENST00000555934 IMPACTQ9P2X3 320 aa8.15□□□□□ -1.1
LINC00643-204ENST00000555934 MAGEC2Q9UBF1 373 aaPredicted RBP8.15□□□□□ -1.1
LINC00643-204ENST00000555934 A0A087X0B3 334 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 A0A1W2PQ27 194 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 A0A1W2PQ64 194 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 A0A1W2PQC6 194 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 A0A1W2PQD8 194 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 PPP1R11O60927 126 aaPredicted RBP8.14□□□□□ -1.11
LINC00643-204ENST00000555934 FPR2P25090 351 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 TACR1P25103 407 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 RPL11P62913 178 aaKnown RBP8.14□□□□□ -1.11
LINC00643-204ENST00000555934 TESK1Q15569 626 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 PTPROQ16827 1216 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 HSF5Q4G112 596 aaPredicted RBP8.14□□□□□ -1.11
LINC00643-204ENST00000555934 TEX2Q8IWB9 1127 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 ZC3H7AQ8IWR0 971 aaKnown RBP8.14□□□□□ -1.11
LINC00643-204ENST00000555934 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.14□□□□□ -1.11
LINC00643-204ENST00000555934 ZFYVE21Q9BQ24 234 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 PLCD4Q9BRC7 762 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 ALG1Q9BT22 464 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 MBNL3Q9NUK0 354 aaKnown RBP8.14□□□□□ -1.11
LINC00643-204ENST00000555934 CLDND1Q9NY35 253 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 MARCH2Q9P0N8 246 aa8.14□□□□□ -1.11
LINC00643-204ENST00000555934 KPNA6O60684 536 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 FUCA1P04066 466 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 RNASE1P07998 156 aaKnown RBP8.13□□□□□ -1.11
LINC00643-204ENST00000555934 IGFALSP35858 605 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 KIR2DL1P43626 348 aaPredicted RBP8.13□□□□□ -1.11
LINC00643-204ENST00000555934 KIR2DL2P43627 348 aaPredicted RBP8.13□□□□□ -1.11
LINC00643-204ENST00000555934 NEK4P51957 841 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 LSAMPQ13449 338 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 THNSL2Q86YJ6 484 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 SIRT2Q8IXJ6 389 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 ABI1Q8IZP0 508 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 ANKS4BQ8N8V4 417 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 KCNJ15Q99712 375 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 IPPKQ9H8X2 491 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 C19orf73Q9NVV2 129 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 COQ6Q9Y2Z9 468 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 COL4A3BPQ9Y5P4 624 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 TAF6LQ9Y6J9 622 aa8.13□□□□□ -1.11
LINC00643-204ENST00000555934 OAS3Q9Y6K5 1087 aaKnown RBP8.13□□□□□ -1.11
LINC00643-204ENST00000555934 A0A1W2PQ45 241 aaPredicted RBP8.12□□□□□ -1.11
LINC00643-204ENST00000555934 A0A1W2PQY0 241 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 BTBD11A6QL63 1104 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 EFEMP2O95967 443 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 SOD2P04179 222 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 ASLP04424 464 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 APPP05067 770 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 MSL3P1P0C860 447 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 JMJD7P0C870 316 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 TIGD5Q53EQ6 642 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 ABHD17CQ6PCB6 329 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 CEP68Q76N32 757 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 NLRP10Q86W26 655 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 PDZD8Q8NEN9 1154 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 NUP43Q8NFH3 380 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 USP33Q8TEY7 942 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 LEO1Q8WVC0 666 aaPredicted RBP8.12□□□□□ -1.11
LINC00643-204ENST00000555934 JAM3Q9BX67 310 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 GOLGA2P5Q9HBQ8 144 aa8.12□□□□□ -1.11
LINC00643-204ENST00000555934 INTS7Q9NVH2 962 aaKnown RBP8.12□□□□□ -1.11
LINC00643-204ENST00000555934 FAM83GA6ND36 823 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 GSG1L2A8MUP6 293 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 PPM1GO15355 546 aaPredicted RBP8.11□□□□□ -1.11
LINC00643-204ENST00000555934 PSPNO60542 156 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 PRKCAP17252 672 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 GRK2P25098 689 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 GRK3P35626 688 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 DNM2P50570 870 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 PAK1Q13153 545 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 PCBP1Q15365 356 aaKnown RBP eCLIP8.11□□□□□ -1.11
LINC00643-204ENST00000555934 KIZQ2M2Z5 673 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 ZNF792Q3KQV3 632 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 CFAP100Q494V2 611 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 CT47A1Q5JQC4 288 aaPredicted RBP8.11□□□□□ -1.11
LINC00643-204ENST00000555934 PIK3R6Q5UE93 754 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 OXR1Q8N573 874 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 PCDH19Q8TAB3 1148 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 CHAC2Q8WUX2 184 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 DDX1Q92499 740 aaKnown RBP8.11□□□□□ -1.11
LINC00643-204ENST00000555934 TRMT2BQ96GJ1 504 aaKnown RBP8.11□□□□□ -1.11
LINC00643-204ENST00000555934 TMEM169Q96HH4 297 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 FAM126AQ9BYI3 521 aaPredicted RBP8.11□□□□□ -1.11
LINC00643-204ENST00000555934 RC3H2Q9HBD1 1191 aaKnown RBP8.11□□□□□ -1.11
LINC00643-204ENST00000555934 FBLN5Q9UBX5 448 aa8.11□□□□□ -1.11
LINC00643-204ENST00000555934 GPR160Q9UJ42 338 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms