RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 WDR11Q9BZH6 1224 aa23.75■■□□□ 1.39
VTI1B-205ENST00000555543 EIF2AK2P19525 551 aaKnown RBP23.74■■□□□ 1.39
VTI1B-205ENST00000555543 SMARCA1P28370 1054 aa23.74■■□□□ 1.39
VTI1B-205ENST00000555543 MAGEA10P43363 369 aaPredicted RBP23.74■■□□□ 1.39
VTI1B-205ENST00000555543 GNAQP50148 359 aa23.74■■□□□ 1.39
VTI1B-205ENST00000555543 TMTC3Q6ZXV5 915 aa23.74■■□□□ 1.39
VTI1B-205ENST00000555543 PCSK9Q8NBP7 692 aaKnown RBP23.74■■□□□ 1.39
VTI1B-205ENST00000555543 RRP36Q96EU6 259 aaKnown RBP23.74■■□□□ 1.39
VTI1B-205ENST00000555543 STARD7Q9NQZ5 370 aa23.74■■□□□ 1.39
VTI1B-205ENST00000555543 PXMP2Q9NR77 195 aa23.74■■□□□ 1.39
VTI1B-205ENST00000555543 SLC34A2O95436 690 aa23.73■■□□□ 1.39
VTI1B-205ENST00000555543 HMGB1P09429 215 aaKnown RBP23.73■■□□□ 1.39
VTI1B-205ENST00000555543 TLE2Q04725 743 aa23.73■■□□□ 1.39
VTI1B-205ENST00000555543 FSCN1Q16658 493 aaKnown RBP23.73■■□□□ 1.39
VTI1B-205ENST00000555543 AP5M1Q9H0R1 490 aa23.73■■□□□ 1.39
VTI1B-205ENST00000555543 Q9Y3F1 56 aa23.73■■□□□ 1.39
VTI1B-205ENST00000555543 hCG_1642624A0A1W2PR95 340 aa23.72■■□□□ 1.39
VTI1B-205ENST00000555543 B4DLN1 442 aa23.72■■□□□ 1.39
VTI1B-205ENST00000555543 ARIH2O95376 493 aa23.72■■□□□ 1.39
VTI1B-205ENST00000555543 MRPL12P52815 198 aaKnown RBP23.72■■□□□ 1.39
VTI1B-205ENST00000555543 TRAF1Q13077 416 aa23.72■■□□□ 1.39
VTI1B-205ENST00000555543 ARHGEF16Q5VV41 709 aa23.72■■□□□ 1.39
VTI1B-205ENST00000555543 CCDC82Q8N4S0 544 aa23.72■■□□□ 1.39
VTI1B-205ENST00000555543 SCFD2Q8WU76 684 aa23.72■■□□□ 1.39
VTI1B-205ENST00000555543 GLT1D1Q96MS3 346 aa23.72■■□□□ 1.39
VTI1B-205ENST00000555543 IWS1Q96ST2 819 aa23.72■■□□□ 1.39
VTI1B-205ENST00000555543 PDLIM7Q9NR12 457 aa23.72■■□□□ 1.39
VTI1B-205ENST00000555543 LTBP2Q14767 1821 aa23.72■■□□□ 1.39
VTI1B-205ENST00000555543 KLF18A0A0U1RQI7 1052 aa23.71■■□□□ 1.39
VTI1B-205ENST00000555543 PPP2R5BQ15173 497 aa23.71■■□□□ 1.39
VTI1B-205ENST00000555543 SYNE3Q6ZMZ3 975 aa23.71■■□□□ 1.39
VTI1B-205ENST00000555543 SH3RF1Q7Z6J0 888 aa23.71■■□□□ 1.39
VTI1B-205ENST00000555543 IL31RAQ8NI17 732 aa23.71■■□□□ 1.39
VTI1B-205ENST00000555543 COPS5Q92905 334 aa23.71■■□□□ 1.39
VTI1B-205ENST00000555543 MAP3K20Q9NYL2 800 aaKnown RBP23.71■■□□□ 1.39
VTI1B-205ENST00000555543 SEC63Q9UGP8 760 aaKnown RBP23.71■■□□□ 1.39
VTI1B-205ENST00000555543 ELP1O95163 1332 aa23.7■■□□□ 1.38
VTI1B-205ENST00000555543 CNTNAP5Q8WYK1 1306 aa23.7■■□□□ 1.38
VTI1B-205ENST00000555543 GCOM1H8Y6P7 765 aaPredicted RBP23.7■■□□□ 1.38
VTI1B-205ENST00000555543 ZBTB43O43298 467 aa23.7■■□□□ 1.38
VTI1B-205ENST00000555543 PQBP1O60828 265 aaKnown RBP23.7■■□□□ 1.38
VTI1B-205ENST00000555543 NR3C2P08235 984 aa23.7■■□□□ 1.38
VTI1B-205ENST00000555543 POLR2MP0CAP2 368 aa23.7■■□□□ 1.38
VTI1B-205ENST00000555543 MDM2Q00987 491 aaPredicted RBP23.7■■□□□ 1.38
VTI1B-205ENST00000555543 BLOC1S2Q6QNY1 142 aa23.7■■□□□ 1.38
VTI1B-205ENST00000555543 CXCL17Q6UXB2 119 aa23.7■■□□□ 1.38
VTI1B-205ENST00000555543 SAMD3Q8N6K7 520 aa23.7■■□□□ 1.38
VTI1B-205ENST00000555543 PDCD2LQ9BRP1 358 aa23.7■■□□□ 1.38
VTI1B-205ENST00000555543 USP26Q9BXU7 913 aa23.7■■□□□ 1.38
VTI1B-205ENST00000555543 PRDM5Q9NQX1 630 aaPredicted RBP23.7■■□□□ 1.38
VTI1B-205ENST00000555543 LAMA3Q16787 3333 aa23.7■■□□□ 1.38
VTI1B-205ENST00000555543 KIAA1217Q5T5P2 1943 aa23.69■■□□□ 1.38
VTI1B-205ENST00000555543 EPB41L2O43491 1005 aaKnown RBP23.69■■□□□ 1.38
VTI1B-205ENST00000555543 TXNP10599 105 aaKnown RBP23.69■■□□□ 1.38
VTI1B-205ENST00000555543 RPS6KB1P23443 525 aa23.69■■□□□ 1.38
VTI1B-205ENST00000555543 STXBP2Q15833 593 aa23.69■■□□□ 1.38
VTI1B-205ENST00000555543 RTN1Q16799 776 aa23.69■■□□□ 1.38
VTI1B-205ENST00000555543 CCDC62Q6P9F0 684 aa23.69■■□□□ 1.38
VTI1B-205ENST00000555543 SEPT14Q6ZU15 432 aa23.69■■□□□ 1.38
VTI1B-205ENST00000555543 Q6ZUG5 572 aa23.69■■□□□ 1.38
VTI1B-205ENST00000555543 FCHSD1Q86WN1 690 aa23.69■■□□□ 1.38
VTI1B-205ENST00000555543 OR6J1Q8NGC5 347 aa23.69■■□□□ 1.38
VTI1B-205ENST00000555543 FAM217BQ9NTX9 383 aaPredicted RBP23.69■■□□□ 1.38
VTI1B-205ENST00000555543 TRIM43BA6NCK2 446 aa23.68■■□□□ 1.38
VTI1B-205ENST00000555543 GOLGA8AA7E2F4 631 aa23.68■■□□□ 1.38
VTI1B-205ENST00000555543 GOLGA8BA8MQT2 603 aa23.68■■□□□ 1.38
VTI1B-205ENST00000555543 CASTP20810 708 aaKnown RBP23.68■■□□□ 1.38
VTI1B-205ENST00000555543 APOBRQ0VD83 1088 aa23.68■■□□□ 1.38
VTI1B-205ENST00000555543 FUT2Q10981 343 aa23.68■■□□□ 1.38
VTI1B-205ENST00000555543 PGM5Q15124 567 aa23.68■■□□□ 1.38
VTI1B-205ENST00000555543 ANKRD33Q7Z3H0 272 aa23.68■■□□□ 1.38
VTI1B-205ENST00000555543 BRF1Q92994 677 aa23.68■■□□□ 1.38
VTI1B-205ENST00000555543 VTI1AQ96AJ9 217 aa23.68■■□□□ 1.38
VTI1B-205ENST00000555543 TRIM43Q96BQ3 446 aaPredicted RBP23.68■■□□□ 1.38
VTI1B-205ENST00000555543 RBM28Q9NW13 759 aaKnown RBP23.68■■□□□ 1.38
VTI1B-205ENST00000555543 A0A0U1RQG5 324 aaPredicted RBP23.67■■□□□ 1.38
VTI1B-205ENST00000555543 NKRFO15226 690 aaKnown RBP eCLIP23.67■■□□□ 1.38
VTI1B-205ENST00000555543 RGS20O76081 388 aa23.67■■□□□ 1.38
VTI1B-205ENST00000555543 CDC27P30260 824 aa23.67■■□□□ 1.38
VTI1B-205ENST00000555543 BMP8BP34820 402 aa23.67■■□□□ 1.38
VTI1B-205ENST00000555543 CDK7P50613 346 aa23.67■■□□□ 1.38
VTI1B-205ENST00000555543 FXR1P51114 621 aaKnown RBP eCLIP23.67■■□□□ 1.38
VTI1B-205ENST00000555543 FGD1P98174 961 aa23.67■■□□□ 1.38
VTI1B-205ENST00000555543 TTLL4Q14679 1199 aa23.67■■□□□ 1.38
VTI1B-205ENST00000555543 PRKAG2Q9UGJ0 569 aa23.67■■□□□ 1.38
VTI1B-205ENST00000555543 GRIN2DO15399 1336 aa23.66■■□□□ 1.38
VTI1B-205ENST00000555543 FRMPD4Q14CM0 1322 aa23.66■■□□□ 1.38
VTI1B-205ENST00000555543 EIF3JO75822 258 aaKnown RBP23.66■■□□□ 1.38
VTI1B-205ENST00000555543 CLTBP09497 229 aa23.66■■□□□ 1.38
VTI1B-205ENST00000555543 MYCLP12524 364 aaPredicted RBP23.66■■□□□ 1.38
VTI1B-205ENST00000555543 LY6KQ17RY6 165 aa23.66■■□□□ 1.38
VTI1B-205ENST00000555543 USP17L6PQ6QN14 398 aa23.66■■□□□ 1.38
VTI1B-205ENST00000555543 GPKOWQ92917 476 aaPredicted RBP eCLIP23.66■■□□□ 1.38
VTI1B-205ENST00000555543 ZFP91Q96JP5 570 aaPredicted RBP23.66■■□□□ 1.38
VTI1B-205ENST00000555543 AGXT2Q9BYV1 514 aa23.66■■□□□ 1.38
VTI1B-205ENST00000555543 NAP1L2Q9ULW6 460 aaPredicted RBP23.66■■□□□ 1.38
VTI1B-205ENST00000555543 ARVCFO00192 962 aa23.65■■□□□ 1.38
VTI1B-205ENST00000555543 MEIS2O14770 477 aa23.65■■□□□ 1.38
VTI1B-205ENST00000555543 ZEB2O60315 1214 aa23.65■■□□□ 1.38
VTI1B-205ENST00000555543 ITGB8P26012 769 aa23.65■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms