RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 TNNI3KQ59H18 835 aa2.32□□□□□ -2.04
PRPF39-208ENST00000554785 KRTAP5-11Q6L8G4 156 aa2.32□□□□□ -2.04
PRPF39-208ENST00000554785 KIAA1211LQ6NV74 962 aa2.32□□□□□ -2.04
PRPF39-208ENST00000554785 ARHGEF39Q8N4T4 335 aa2.32□□□□□ -2.04
PRPF39-208ENST00000554785 C19orf47Q8N9M1 422 aaKnown RBP2.32□□□□□ -2.04
PRPF39-208ENST00000554785 TP53I13Q8NBR0 393 aaPredicted RBP2.32□□□□□ -2.04
PRPF39-208ENST00000554785 PMFBP1Q8TBY8 1022 aa2.32□□□□□ -2.04
PRPF39-208ENST00000554785 PWWP2AQ96N64 755 aa2.32□□□□□ -2.04
PRPF39-208ENST00000554785 SYT3Q9BQG1 590 aa2.32□□□□□ -2.04
PRPF39-208ENST00000554785 PHAXQ9H814 394 aaKnown RBP2.32□□□□□ -2.04
PRPF39-208ENST00000554785 PDLIM7Q9NR12 457 aa2.32□□□□□ -2.04
PRPF39-208ENST00000554785 WHRNQ9P202 907 aa2.32□□□□□ -2.04
PRPF39-208ENST00000554785 PALD1Q9ULE6 856 aa2.32□□□□□ -2.04
PRPF39-208ENST00000554785 DIS3Q9Y2L1 958 aaKnown RBP2.32□□□□□ -2.04
PRPF39-208ENST00000554785 SF3B6Q9Y3B4 125 aaKnown RBP2.32□□□□□ -2.04
PRPF39-208ENST00000554785 RWDD3Q9Y3V2 267 aa2.32□□□□□ -2.04
PRPF39-208ENST00000554785 BAZ1BQ9UIG0 1483 aaKnown RBP2.31□□□□□ -2.04
PRPF39-208ENST00000554785 A0A1B0GTL3 188 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 A0A1W2PQ27 194 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 A0A1W2PQ64 194 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 A0A1W2PQC6 194 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 A0A1W2PQD8 194 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 C2orf71A6NGG8 1288 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 ABLIM1O14639 778 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 FFAR3O14843 346 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 TBX1O43435 398 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 PLA2G1BP04054 148 aaKnown RBP2.31□□□□□ -2.04
PRPF39-208ENST00000554785 GLI4P10075 376 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 MAPKAPK2P49137 400 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 CAP1Q01518 475 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 NBPF6Q5VWK0 638 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 BICRALQ6AI39 1079 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 CNKSR3Q6P9H4 555 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 ZC3H14Q6PJT7 736 aaKnown RBP2.31□□□□□ -2.04
PRPF39-208ENST00000554785 PAQR3Q6TCH7 311 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 CYP2R1Q6VVX0 501 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 ZDHHC14Q8IZN3 488 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 NLGN2Q8NFZ4 835 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 FEZF2Q8TBJ5 459 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 MICAL1Q8TDZ2 1067 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 HNRNPLLQ8WVV9 542 aaKnown RBP2.31□□□□□ -2.04
PRPF39-208ENST00000554785 NBPF4Q96M43 638 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 ACTR10Q9NZ32 417 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 GULP1Q9UBP9 304 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 SIT1Q9Y3P8 196 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 ATAD2BQ9ULI0 1458 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 LAMC3Q9Y6N6 1575 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 CHD1O14646 1710 aa2.31□□□□□ -2.04
PRPF39-208ENST00000554785 C7orf72A4D263 438 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 F8W031 263 aaPredicted RBP2.3□□□□□ -2.04
PRPF39-208ENST00000554785 U2SURPO15042 1029 aaKnown RBP2.3□□□□□ -2.04
PRPF39-208ENST00000554785 SRGAP3O43295 1099 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 KLF4O43474 513 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 KCNH1O95259 989 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 TBC1D8O95759 1140 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 CYBBP04839 570 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 ENDOUP21128 410 aaKnown RBP2.3□□□□□ -2.04
PRPF39-208ENST00000554785 EEF1DP3Q658K8 133 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 RCSD1Q6JBY9 416 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 VHLLQ6RSH7 139 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 DPH6Q7L8W6 267 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 DPF3Q92784 378 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 COPS5Q92905 334 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 RCC1LQ96I51 464 aaKnown RBP2.3□□□□□ -2.04
PRPF39-208ENST00000554785 MTA3Q9BTC8 594 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 TRIM55Q9BYV6 548 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 LNPKQ9C0E8 428 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 ADAM7Q9H2U9 754 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 SMARCA4P51532 1647 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 B2RBV5 119 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 PPM1BO75688 479 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 AMPD2Q01433 879 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 EFEMP1Q12805 493 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 RAB33AQ14088 237 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 NR1I3Q14994 352 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 SF1Q15637 639 aaKnown RBP2.3□□□□□ -2.04
PRPF39-208ENST00000554785 FXNQ16595 210 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 INF2Q27J81 1249 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 CCDC144BQ3MJ40 725 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 FRMD5Q7Z6J6 570 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 LINC01356Q8N9X3 169 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 ZNF526Q8TF50 670 aaPredicted RBP2.3□□□□□ -2.04
PRPF39-208ENST00000554785 LUC7LQ9NQ29 371 aaKnown RBP2.3□□□□□ -2.04
PRPF39-208ENST00000554785 CLEC1BQ9P126 229 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 SIRPGQ9P1W8 387 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 TMEFF2Q9UIK5 374 aaPredicted RBP2.3□□□□□ -2.04
PRPF39-208ENST00000554785 AKT3Q9Y243 479 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 SUGT1Q9Y2Z0 365 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 EMC9Q9Y3B6 208 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 BACE2Q9Y5Z0 518 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 SLC12A7Q9Y666 1083 aa2.3□□□□□ -2.04
PRPF39-208ENST00000554785 WDR62O43379 1518 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 DCAF1Q9Y4B6 1507 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 MRC2Q9UBG0 1479 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 NPHP3-ACAD11A0A0J9YXS1 232 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 A0A1W2PQJ5 194 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 ANKRD34BA5PLL1 514 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 THBDP07204 575 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 ASGR2P07307 311 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 PLS3P13797 630 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms