RNA–Protein interactions for RNA: ENST00000554592.5

ATXN3-228, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-228ENST00000554592 CBX8Q9HC52 389 aa6.44□□□□□ -1.38
ATXN3-228ENST00000554592 COPRSQ9NQ92 184 aa6.44□□□□□ -1.38
ATXN3-228ENST00000554592 DDX41Q9UJV9 622 aaKnown RBP6.44□□□□□ -1.38
ATXN3-228ENST00000554592 CYP8B1Q9UNU6 501 aa6.44□□□□□ -1.38
ATXN3-228ENST00000554592 LEMD3Q9Y2U8 911 aa6.44□□□□□ -1.38
ATXN3-228ENST00000554592 KIF7Q2M1P5 1343 aa6.44□□□□□ -1.38
ATXN3-228ENST00000554592 AFDNP55196 1824 aaKnown RBP6.43□□□□□ -1.38
ATXN3-228ENST00000554592 FER1L6Q2WGJ9 1857 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 PRAMEF22A3QJZ6 481 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 ERVV-1B6SEH8 477 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 H7C1D1 291 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 TCERG1O14776 1098 aaKnown RBP6.43□□□□□ -1.38
ATXN3-228ENST00000554592 HCLS1P14317 486 aaPredicted RBP6.43□□□□□ -1.38
ATXN3-228ENST00000554592 GMPSP49915 693 aaPredicted RBP6.43□□□□□ -1.38
ATXN3-228ENST00000554592 RACK1P63244 317 aaKnown RBP6.43□□□□□ -1.38
ATXN3-228ENST00000554592 KIF23Q02241 960 aaPredicted RBP6.43□□□□□ -1.38
ATXN3-228ENST00000554592 TNIP1Q15025 636 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 RGMBQ6NW40 437 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 LLGL2Q6P1M3 1020 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 NFXL1Q6ZNB6 911 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 ZNF765Q7L2R6 523 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 USP48Q86UV5 1035 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 C2orf69Q8N8R5 385 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 RNF214Q8ND24 703 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 GIMAP7Q8NHV1 300 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 GCC1Q96CN9 775 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 METTL22Q9BUU2 404 aaPredicted RBP6.43□□□□□ -1.38
ATXN3-228ENST00000554592 RNF186Q9NXI6 227 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 ATP6V0A2Q9Y487 856 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 SAMM50Q9Y512 469 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 PCDHGB7Q9Y5F8 929 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 DLEC1Q9Y238 1755 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 VIRMAQ69YN4 1812 aaKnown RBP6.43□□□□□ -1.38
ATXN3-228ENST00000554592 SLX4Q8IY92 1834 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 NPC1L1Q9UHC9 1359 aa6.43□□□□□ -1.38
ATXN3-228ENST00000554592 ADAMTSL1Q8N6G6 1762 aa6.42□□□□□ -1.38
ATXN3-228ENST00000554592 FAM155AB1AL88 458 aaPredicted RBP6.42□□□□□ -1.38
ATXN3-228ENST00000554592 U2SURPO15042 1029 aaKnown RBP6.42□□□□□ -1.38
ATXN3-228ENST00000554592 BBOX1O75936 387 aa6.42□□□□□ -1.38
ATXN3-228ENST00000554592 LRRC14Q15048 493 aa6.42□□□□□ -1.38
ATXN3-228ENST00000554592 PKN2Q16513 984 aaKnown RBP6.42□□□□□ -1.38
ATXN3-228ENST00000554592 AOC3Q16853 763 aa6.42□□□□□ -1.38
ATXN3-228ENST00000554592 LCE3BQ5TA77 95 aa6.42□□□□□ -1.38
ATXN3-228ENST00000554592 CTU1Q7Z7A3 348 aaKnown RBP6.42□□□□□ -1.38
ATXN3-228ENST00000554592 GAL3ST3Q96A11 431 aa6.42□□□□□ -1.38
ATXN3-228ENST00000554592 ISL2Q96A47 359 aa6.42□□□□□ -1.38
ATXN3-228ENST00000554592 RTFDC1Q9BY42 306 aaPredicted RBP6.42□□□□□ -1.38
ATXN3-228ENST00000554592 ACBD3Q9H3P7 528 aa6.42□□□□□ -1.38
ATXN3-228ENST00000554592 GBA2Q9HCG7 927 aaPredicted RBP6.42□□□□□ -1.38
ATXN3-228ENST00000554592 CNOT7Q9UIV1 285 aaKnown RBP6.42□□□□□ -1.38
ATXN3-228ENST00000554592 PCOLCE2Q9UKZ9 415 aa6.42□□□□□ -1.38
ATXN3-228ENST00000554592 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.42□□□□□ -1.38
ATXN3-228ENST00000554592 CDHR2Q9BYE9 1310 aa6.42□□□□□ -1.38
ATXN3-228ENST00000554592 CEMIPQ8WUJ3 1361 aa6.42□□□□□ -1.38
ATXN3-228ENST00000554592 SNED1Q8TER0 1413 aa6.42□□□□□ -1.38
ATXN3-228ENST00000554592 DICER1Q9UPY3 1922 aaKnown RBP6.41□□□□□ -1.38
ATXN3-228ENST00000554592 F6X3S4 739 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 HSPA5P11021 654 aaKnown RBP6.41□□□□□ -1.38
ATXN3-228ENST00000554592 CDK5R2Q13319 367 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 NAALADL2Q58DX5 795 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 SLC10A5Q5PT55 438 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 SUSD4Q5VX71 490 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 UBE3DQ7Z6J8 389 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 SP8Q8IXZ3 490 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 RTF1Q92541 710 aaKnown RBP6.41□□□□□ -1.38
ATXN3-228ENST00000554592 DPF2Q92785 391 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 PHACTR3Q96KR7 559 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 KRTAP4-12Q9BQ66 201 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 RSRP1Q9BUV0 290 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 CCSER2Q9H7U1 834 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 PIDD1Q9HB75 910 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 KBTBD4Q9NVX7 518 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 CCDC88AQ3V6T2 1871 aa6.41□□□□□ -1.38
ATXN3-228ENST00000554592 DCDC2CA8MYV0 355 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 CYP26A1O43174 497 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 HTATSF1O43719 755 aaKnown RBP6.4□□□□□ -1.38
ATXN3-228ENST00000554592 RAD17O75943 681 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 PRNPP04156 253 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 HNRNPUQ00839 825 aaKnown RBP eCLIP6.4□□□□□ -1.38
ATXN3-228ENST00000554592 CYP27A1Q02318 531 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 KIAA2012Q0VF49 1180 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 INPP5AQ14642 412 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 TAF7Q15545 349 aaPredicted RBP6.4□□□□□ -1.38
ATXN3-228ENST00000554592 MAP3K11Q16584 847 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 PPM1JQ5JR12 505 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 TTBK2Q6IQ55 1244 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 DPP8Q6V1X1 898 aaPredicted RBP6.4□□□□□ -1.38
ATXN3-228ENST00000554592 KIF6Q6ZMV9 814 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 KRT26Q7Z3Y9 468 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 PPP1R42Q7Z4L9 355 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 C12orf40Q86WS4 652 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 ZNF34Q8IZ26 560 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 ZNF654Q8IZM8 581 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 NGEFQ8N5V2 710 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 DCPSQ96C86 337 aaKnown RBP6.4□□□□□ -1.38
ATXN3-228ENST00000554592 ZC3H7BQ9UGR2 993 aaKnown RBP6.4□□□□□ -1.38
ATXN3-228ENST00000554592 CSADQ9Y600 493 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 U3KQE9 123 aa6.4□□□□□ -1.38
ATXN3-228ENST00000554592 ANKRD31Q8N7Z5 1873 aa6.4□□□□□ -1.39
ATXN3-228ENST00000554592 RNGTTO60942 597 aaKnown RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms