RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 FCHSD1Q86WN1 690 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 DNERQ8NFT8 737 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 BRF1Q92994 677 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 RRP36Q96EU6 259 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 WDR11Q9BZH6 1224 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 ATP11BQ9Y2G3 1177 aa13.41□□□□□ -0.26
CCDC88C-208ENST00000554165 RBM47A0AV96 593 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 GOLGA8AA7E2F4 631 aa13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 GOLGA8BA8MQT2 603 aa13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 PPFIA3O75145 1194 aa13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 ARIH2O95376 493 aa13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 HMGB1P09429 215 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 ADD1P35611 737 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 GNAQP50148 359 aa13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 FGD1P98174 961 aa13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 GHRHRQ02643 423 aa13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 RTN1Q16799 776 aa13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 ARHGEF16Q5VV41 709 aa13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 SYNE3Q6ZMZ3 975 aa13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 NSUN6Q8TEA1 469 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 GPKOWQ92917 476 aaPredicted RBP eCLIP13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 LZTS2Q9BRK4 669 aa13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 UPF3BQ9BZI7 483 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 PXMP2Q9NR77 195 aa13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 RANBP2P49792 3224 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-208ENST00000554165 GCOM1H8Y6P7 765 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 RGS20O76081 388 aa13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 ASGR1P07306 291 aa13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 NR3C2P08235 984 aa13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 POLR2MP0CAP2 368 aa13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 CST5P28325 142 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 SMARCA1P28370 1054 aa13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 DUSP28Q4G0W2 176 aa13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 USP17L6PQ6QN14 398 aa13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 SEPT14Q6ZU15 432 aa13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 SH3RF1Q7Z6J0 888 aa13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 PPP1R13LQ8WUF5 828 aa13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 AP5M1Q9H0R1 490 aa13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 ZSWIM6Q9HCJ5 1215 aa13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 SEC63Q9UGP8 760 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 V9GY48 417 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 CNTNAP5Q8WYK1 1306 aa13.39□□□□□ -0.27
CCDC88C-208ENST00000554165 LOC102724159A0A0B4J2E5 919 aa13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 MYCLP12524 364 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 NKX3-2P78367 333 aa13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 TLE2Q04725 743 aa13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 TOB2Q14106 344 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 SNX17Q15036 470 aa13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 PWP2Q15269 919 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 FSCN1Q16658 493 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 LY6KQ17RY6 165 aa13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 TYW1BQ6NUM6 668 aa13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 CXCL17Q6UXB2 119 aa13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 PDCD2LQ9BRP1 358 aa13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 TSEN34Q9BSV6 310 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 AGXT2Q9BYV1 514 aa13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 NCOA5Q9HCD5 579 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 RBM27Q9P2N5 1060 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-208ENST00000554165 MEIS2O14770 477 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 SORBS3O60504 671 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 DTNBO60941 627 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 TXNP10599 105 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 PSMA5P28066 241 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 MAGEA10P43363 369 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 PSMC6P62333 389 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 PGM5Q15124 567 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 STXBP2Q15833 593 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 UBE2SQ16763 222 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 WWC2Q6AWC2 1192 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 CCDC62Q6P9F0 684 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 RUFY3Q7L099 469 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 HEATR3Q7Z4Q2 680 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 OR6J1Q8NGC5 347 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 VTI1AQ96AJ9 217 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 IWS1Q96ST2 819 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 PRO3102Q9H379 93 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 SPC25Q9HBM1 224 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 STARD7Q9NQZ5 370 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 GRIN2DO15399 1336 aa13.37□□□□□ -0.27
CCDC88C-208ENST00000554165 TRIM43BA6NCK2 446 aa13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 MOXD2PA6NHM9 499 aa13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 ADAMTS3O15072 1205 aa13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 EPB41L2O43491 1005 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 PQBP1O60828 265 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 PDIA3P30101 505 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 METAP2P50579 478 aaKnown RBP eCLIP13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 CCT2P78371 535 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 MDM2Q00987 491 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 PPP2R5BQ15173 497 aa13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 HABP4Q5JVS0 413 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 VSIG10LQ86VR7 867 aa13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 PCSK9Q8NBP7 692 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 SCFD2Q8WU76 684 aa13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 TRIM43Q96BQ3 446 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 MAF1Q9H063 256 aa13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 BCAS3Q9H6U6 928 aa13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 PRDM5Q9NQX1 630 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 PDLIM7Q9NR12 457 aa13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 RBM28Q9NW13 759 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-208ENST00000554165 CYP46A1Q9Y6A2 500 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms