RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 TBC1D10CQ8IV04 446 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 TBC1D5Q92609 795 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 AGPAT5Q9NUQ2 364 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 MCM9Q9NXL9 1143 aa15.62■□□□□ 0.09
LIMS1-215ENST00000544547 PDHA1P08559 390 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 CARSP49589 748 aaKnown RBP15.61■□□□□ 0.09
LIMS1-215ENST00000544547 ATG9AQ7Z3C6 839 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 TRIM4Q9C037 500 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 IRAK4Q9NWZ3 460 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 ANO9A1A5B4 782 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 H0Y3Z8 333 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 PDHBP11177 359 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 GCFC2P16383 781 aaKnown RBP15.61■□□□□ 0.09
LIMS1-215ENST00000544547 MCAMP43121 646 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 WDR93Q6P2C0 686 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 MB21D2Q8IYB1 491 aaPredicted RBP15.61■□□□□ 0.09
LIMS1-215ENST00000544547 WHAMMQ8TF30 809 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 PIH1D3Q9NQM4 214 aaKnown RBP15.61■□□□□ 0.09
LIMS1-215ENST00000544547 HSPA2P54652 639 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 CTSWP56202 376 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 GSTO1P78417 241 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 RASIP1Q5U651 963 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 CCDC24Q8N4L8 307 aa15.61■□□□□ 0.09
LIMS1-215ENST00000544547 ZBTB38Q8NAP3 1195 aaPredicted RBP15.61■□□□□ 0.09
LIMS1-215ENST00000544547 FAM205CA6NFA0 338 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 NBPF26B4DH59 902 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 NBPF10Q6P3W6 841 aaKnown RBP15.6■□□□□ 0.09
LIMS1-215ENST00000544547 ILDR1Q86SU0 546 aaPredicted RBP15.6■□□□□ 0.09
LIMS1-215ENST00000544547 CCDC105Q8IYK2 499 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 NBPF15Q8N660 670 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 ADAMTS1Q9UHI8 967 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 ADAMTS13Q76LX8 1427 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 TMEM131LA2VDJ0 1609 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 CEMIPQ8WUJ3 1361 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 UBN2Q6ZU65 1347 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 CETN3O15182 167 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 PDE8BO95263 885 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 ADD2P35612 726 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 STXBP4Q6ZWJ1 553 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 DENND2AQ9ULE3 1009 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 LGALS16A8MUM7 142 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 TECP42680 631 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 LRRC41Q15345 812 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 U2AF1L4Q8WU68 220 aaKnown RBP15.6■□□□□ 0.09
LIMS1-215ENST00000544547 TSC22D3Q99576 134 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 MLXIPLQ9NP71 852 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 KCND1Q9NSA2 647 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 HOMER3Q9NSC5 361 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 DIAPH2O60879 1101 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 TBCAO75347 108 aaKnown RBP15.6■□□□□ 0.09
LIMS1-215ENST00000544547 VPS41P49754 854 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 FOXO4P98177 505 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 TMC4Q7Z404 712 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 SNX12Q9UMY4 172 aa15.6■□□□□ 0.09
LIMS1-215ENST00000544547 PALMO75781 387 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 PCCAP05165 728 aaPredicted RBP15.59■□□□□ 0.09
LIMS1-215ENST00000544547 GFPT1Q06210 699 aaPredicted RBP15.59■□□□□ 0.09
LIMS1-215ENST00000544547 OTUD6AQ7L8S5 288 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 P2RX5Q93086 422 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 GBP5Q96PP8 586 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 ASIC3Q9UHC3 531 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 SEMA3EO15041 775 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 CIAO1O76071 339 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 SUN1O94901 812 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 MMEP08473 750 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 HERC4Q5GLZ8 1057 aaPredicted RBP15.59■□□□□ 0.09
LIMS1-215ENST00000544547 CYB5D1Q6P9G0 228 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 LRRC27Q9C0I9 530 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 AATFQ9NY61 560 aaKnown RBP eCLIP15.59■□□□□ 0.09
LIMS1-215ENST00000544547 CCDC169A6NNP5 214 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 CTNNA2P26232 953 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 PICALMQ13492 652 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 MCUR1Q96AQ8 359 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 RAB17Q9H0T7 212 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 SENP2Q9HC62 589 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 PLCB1Q9NQ66 1216 aa15.59■□□□□ 0.09
LIMS1-215ENST00000544547 FBXO2Q9UK22 296 aaPredicted RBP15.59■□□□□ 0.09
LIMS1-215ENST00000544547 ABL1P00519 1130 aa15.58■□□□□ 0.09
LIMS1-215ENST00000544547 RFX5P48382 616 aaPredicted RBP15.58■□□□□ 0.09
LIMS1-215ENST00000544547 NBPF9Q3BBW0 867 aa15.58■□□□□ 0.09
LIMS1-215ENST00000544547 GSTA5Q7RTV2 222 aa15.58■□□□□ 0.09
LIMS1-215ENST00000544547 RBM12Q9NTZ6 932 aaKnown RBP15.58■□□□□ 0.09
LIMS1-215ENST00000544547 LUC7L3O95232 432 aaKnown RBP15.58■□□□□ 0.08
LIMS1-215ENST00000544547 TPTE2Q6XPS3 522 aa15.58■□□□□ 0.08
LIMS1-215ENST00000544547 RETREG2Q8NC44 543 aa15.58■□□□□ 0.08
LIMS1-215ENST00000544547 CYFIP2Q96F07 1278 aa15.58■□□□□ 0.08
LIMS1-215ENST00000544547 C6orf50Q9HD87 102 aa15.58■□□□□ 0.08
LIMS1-215ENST00000544547 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.58■□□□□ 0.08
LIMS1-215ENST00000544547 USH1CQ9Y6N9 552 aa15.58■□□□□ 0.08
LIMS1-215ENST00000544547 KIF20BQ96Q89 1820 aa15.58■□□□□ 0.08
LIMS1-215ENST00000544547 SYF2O95926 243 aaKnown RBP15.58■□□□□ 0.08
LIMS1-215ENST00000544547 HDAC7Q8WUI4 952 aa15.58■□□□□ 0.08
LIMS1-215ENST00000544547 ZC3H12CQ9C0D7 883 aaKnown RBP15.58■□□□□ 0.08
LIMS1-215ENST00000544547 DDX47Q9H0S4 455 aaKnown RBP15.58■□□□□ 0.08
LIMS1-215ENST00000544547 FLOT1O75955 427 aa15.58■□□□□ 0.08
LIMS1-215ENST00000544547 GYG1P46976 350 aa15.58■□□□□ 0.08
LIMS1-215ENST00000544547 LACRTQ9GZZ8 138 aa15.58■□□□□ 0.08
LIMS1-215ENST00000544547 SPOPO43791 374 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 UBE3CQ15386 1083 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 ERMNQ8TAM6 284 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms