RNA–Protein interactions for RNA: ENST00000542841.1

SRGAP1-205, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 2

Gene SRGAP1, Length 836 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-205ENST00000542841 CCL23P55773 120 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 BEX3Q00994 111 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 TNFAIP2Q03169 654 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 ITGA7Q13683 1181 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 CXCL17Q6UXB2 119 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 IQCA1Q86XH1 822 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 CHST13Q8NET6 341 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 GTF3C6Q969F1 213 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 KIFC2Q96AC6 838 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 TCEANC2Q96MN5 208 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 RAVER2Q9HCJ3 691 aaKnown RBP13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 ZSWIM5Q9P217 1185 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 NID2Q14112 1375 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 NCOR1O75376 2440 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 CHD7Q9P2D1 2997 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 UMODL1Q5DID0 1318 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 ZBBXA8MT70 800 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 GTPBP6O43824 516 aaPredicted RBP13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 DHX16O60231 1041 aaKnown RBP13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 ZEB2O60315 1214 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 ATP2A2P16615 1042 aaKnown RBP13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 KCNQ1P51787 676 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 OAZ1P54368 228 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 COL9A3Q14050 684 aaPredicted RBP13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 CYB5R4Q7L1T6 521 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 TLK2Q86UE8 772 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 IGDCC4Q8TDY8 1250 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 FGD4Q96M96 766 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 NOC4LQ9BVI4 516 aaKnown RBP13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 KATNBL1Q9H079 304 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 AP5M1Q9H0R1 490 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 MKNK2Q9HBH9 465 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 SLC38A10Q9HBR0 1119 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 TOMM22Q9NS69 142 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 NYAP2Q9P242 653 aa13.4□□□□□ -0.26
SRGAP1-205ENST00000542841 BDP1A6H8Y1 2624 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 IFIT3O14879 490 aaKnown RBP13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 B4GALT4O60513 344 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 LARGE1O95461 756 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 MYOGP15173 224 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 WTAPQ15007 396 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 PPP2R5BQ15173 497 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 FSCN1Q16658 493 aaKnown RBP13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 TMEM67Q5HYA8 995 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 CCDC83Q8IWF9 413 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 SPRYD3Q8NCJ5 442 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 UBAC1Q9BSL1 405 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 LRRC2Q9BYS8 371 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 TRPV6Q9H1D0 765 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 TCP11L1Q9NUJ3 509 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 CLIP2Q9UDT6 1046 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 FEM1BQ9UK73 627 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 SMC3Q9UQE7 1217 aa13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 GNEQ9Y223 722 aaKnown RBP13.39□□□□□ -0.27
SRGAP1-205ENST00000542841 TCF20Q9UGU0 1960 aaKnown RBP13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 GBF1Q92538 1859 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 ASB14A6NK59 587 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 PFKMP08237 780 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 POU3F3P20264 500 aaPredicted RBP13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 RASA1P20936 1047 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 PDIA3P30101 505 aaKnown RBP13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 HMGN5P82970 282 aaKnown RBP13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 CNTN2Q02246 1040 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 APOBRQ0VD83 1088 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 RRP12Q5JTH9 1297 aaKnown RBP13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 SYNE3Q6ZMZ3 975 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 CHST3Q7LGC8 479 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 RGS22Q8NE09 1264 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 LRFN3Q9BTN0 628 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 WNT8AQ9H1J5 351 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 ACAD9Q9H845 621 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 LY9Q9HBG7 655 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 HOMER2Q9NSB8 354 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 COG5Q9UP83 839 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 KIF3AQ9Y496 699 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 MTCH2Q9Y6C9 303 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 ASTN1O14525 1302 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 GRIN2DO15399 1336 aa13.38□□□□□ -0.27
SRGAP1-205ENST00000542841 REV3LO60673 3130 aa13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 PLIN4Q96Q06 1357 aa13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 KLF18A0A0U1RQI7 1052 aa13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 CCDC69A6NI79 296 aa13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 DYNC1LI2O43237 492 aaPredicted RBP13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 RANBP6O60518 1105 aaKnown RBP13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 PDCP20941 246 aa13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 ST3GAL1Q11201 340 aa13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 SEC23AQ15436 765 aa13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 TMEM31Q5JXX7 168 aa13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 PPP4R3BQ5MIZ7 849 aa13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 ZNF444Q8N0Y2 327 aaPredicted RBP13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 FAM133AQ8N9E0 248 aa13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 SCLYQ96I15 445 aa13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 ZSCAN10Q96SZ4 725 aaPredicted RBP13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 EPHX3Q9H6B9 360 aa13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 GREB1LQ9C091 1923 aaPredicted RBP13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 TNKSO95271 1327 aa13.37□□□□□ -0.27
SRGAP1-205ENST00000542841 MCM3APO60318 1980 aa13.36□□□□□ -0.27
SRGAP1-205ENST00000542841 TSPY2A6NKD2 308 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms