RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 PAK1Q13153 545 aa16.32■□□□□ 0.2
CLIP1-216ENST00000541410 PRR16Q569H4 304 aa16.32■□□□□ 0.2
CLIP1-216ENST00000541410 SLC30A10Q6XR72 485 aa16.32■□□□□ 0.2
CLIP1-216ENST00000541410 ZNF341Q9BYN7 854 aa16.32■□□□□ 0.2
CLIP1-216ENST00000541410 TRIM9Q9C026 710 aa16.32■□□□□ 0.2
CLIP1-216ENST00000541410 CNOT7Q9UIV1 285 aaKnown RBP16.32■□□□□ 0.2
CLIP1-216ENST00000541410 PCDHA12Q9UN75 941 aa16.32■□□□□ 0.2
CLIP1-216ENST00000541410 CFBP00751 764 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 UBXN2AP68543 259 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 ARHGAP4P98171 946 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 FKBP1CQ5VVH2 108 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 CYP2W1Q8TAV3 490 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 FEZ1Q99689 392 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 SGIP1Q9BQI5 828 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 RMND1Q9NWS8 449 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 SPDYE3A6NKU9 549 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 PDE4DQ08499 809 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 BTNL9Q6UXG8 535 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 APTXQ7Z2E3 356 aaKnown RBP16.31■□□□□ 0.2
CLIP1-216ENST00000541410 CCDC125Q86Z20 511 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 VCPKMTQ9H867 229 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 ATAD5Q96QE3 1844 aa16.31■□□□□ 0.2
CLIP1-216ENST00000541410 ADKP55263 362 aaKnown RBP16.3■□□□□ 0.2
CLIP1-216ENST00000541410 STK4Q13043 487 aa16.3■□□□□ 0.2
CLIP1-216ENST00000541410 KRT79Q5XKE5 535 aa16.3■□□□□ 0.2
CLIP1-216ENST00000541410 TEPSINQ96N21 525 aa16.3■□□□□ 0.2
CLIP1-216ENST00000541410 HACL1Q9UJ83 578 aa16.3■□□□□ 0.2
CLIP1-216ENST00000541410 ZNF541Q9H0D2 1346 aa16.3■□□□□ 0.2
CLIP1-216ENST00000541410 FAM86B1E9PN63 330 aa16.3■□□□□ 0.2
CLIP1-216ENST00000541410 TBC1D12O60347 775 aa16.3■□□□□ 0.2
CLIP1-216ENST00000541410 FAM86B2P0C5J1 330 aa16.3■□□□□ 0.2
CLIP1-216ENST00000541410 PTGER2P43116 358 aa16.3■□□□□ 0.2
CLIP1-216ENST00000541410 ORC2Q13416 577 aaPredicted RBP16.3■□□□□ 0.2
CLIP1-216ENST00000541410 CDKAL1Q5VV42 579 aa16.3■□□□□ 0.2
CLIP1-216ENST00000541410 LARP4BQ92615 738 aaKnown RBP16.3■□□□□ 0.2
CLIP1-216ENST00000541410 MYMKA6NI61 221 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 PHF20L1A8MW92 1017 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 SSBP05455 408 aaKnown RBP eCLIP16.29■□□□□ 0.2
CLIP1-216ENST00000541410 NR1I3Q14994 352 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 SV2BQ7L1I2 683 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 ADSSL1Q8N142 457 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 CCDC150Q8NCX0 1101 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 CPLX3Q8WVH0 158 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 RAB34Q9BZG1 259 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 VPS16Q9H269 839 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 SLC39A2Q9NP94 309 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 RWDD2AQ9UIY3 292 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 RHOBTB3O94955 611 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 ASNSP08243 561 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 INPP5BP32019 993 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 NBPF12Q5TAG4 269 aaPredicted RBP16.29■□□□□ 0.2
CLIP1-216ENST00000541410 EXOC1Q9NV70 894 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 TAB2Q9NYJ8 693 aa16.29■□□□□ 0.2
CLIP1-216ENST00000541410 A0A1B0GTH6 734 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 IDEP14735 1019 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 GCFC2P16383 781 aaKnown RBP16.28■□□□□ 0.2
CLIP1-216ENST00000541410 ZNF280AP59817 542 aaPredicted RBP16.28■□□□□ 0.2
CLIP1-216ENST00000541410 PDIA5Q14554 519 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 DEFB129Q9H1M3 183 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 CUEDC2Q9H467 287 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 CD2APQ9Y5K6 639 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 POTEB3A0JP26 581 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 POTECB2RU33 542 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 E9PMD0 336 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 USP11P51784 963 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 RAD51AP2Q09MP3 1159 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 KCNB1Q14721 858 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 KRT31Q15323 416 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 SPECC1LQ69YQ0 1117 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 POTEBQ6S5H4 581 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 GIMAP8Q8ND71 665 aaPredicted RBP16.28■□□□□ 0.2
CLIP1-216ENST00000541410 C7orf25Q9BPX7 421 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 GLT8D2Q9H1C3 349 aa16.28■□□□□ 0.2
CLIP1-216ENST00000541410 CACNB1Q02641 598 aaPredicted RBP16.27■□□□□ 0.2
CLIP1-216ENST00000541410 AP3B2Q13367 1082 aa16.27■□□□□ 0.2
CLIP1-216ENST00000541410 KIF4BQ2VIQ3 1234 aa16.27■□□□□ 0.2
CLIP1-216ENST00000541410 CEP135Q66GS9 1140 aa16.27■□□□□ 0.2
CLIP1-216ENST00000541410 CRYGNQ8WXF5 182 aa16.27■□□□□ 0.2
CLIP1-216ENST00000541410 ZNF592Q92610 1267 aa16.27■□□□□ 0.2
CLIP1-216ENST00000541410 RAD54LQ92698 747 aa16.27■□□□□ 0.2
CLIP1-216ENST00000541410 AGBL1Q96MI9 1066 aa16.27■□□□□ 0.2
CLIP1-216ENST00000541410 KCNMB3Q9NPA1 279 aa16.27■□□□□ 0.2
CLIP1-216ENST00000541410 ADD3Q9UEY8 706 aaKnown RBP16.27■□□□□ 0.2
CLIP1-216ENST00000541410 KIAA1024Q9UPX6 916 aa16.27■□□□□ 0.2
CLIP1-216ENST00000541410 ZNF76P36508 570 aa16.27■□□□□ 0.19
CLIP1-216ENST00000541410 CT47A1Q5JQC4 288 aaPredicted RBP16.27■□□□□ 0.19
CLIP1-216ENST00000541410 E4F1Q66K89 784 aaPredicted RBP16.27■□□□□ 0.19
CLIP1-216ENST00000541410 CPXCR1Q8N123 301 aa16.27■□□□□ 0.19
CLIP1-216ENST00000541410 KIAA0895Q8NCT3 520 aa16.27■□□□□ 0.19
CLIP1-216ENST00000541410 GLIS3Q8NEA6 775 aa16.27■□□□□ 0.19
CLIP1-216ENST00000541410 LENG9Q96B70 501 aa16.27■□□□□ 0.19
CLIP1-216ENST00000541410 TRIM47Q96LD4 638 aa16.27■□□□□ 0.19
CLIP1-216ENST00000541410 POLR2AP24928 1970 aaKnown RBP16.26■□□□□ 0.19
CLIP1-216ENST00000541410 UQCRHLA0A096LP55 91 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 KCNJ18B7U540 433 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 FZD9O00144 591 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 MEIS1O00470 390 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 PES1O00541 588 aaKnown RBP16.26■□□□□ 0.19
CLIP1-216ENST00000541410 UQCRHP07919 91 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 TNNT1P13805 278 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms