RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 ATRIPQ8WXE1 791 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 DCP1AQ9NPI6 582 aaPredicted RBP15.5■□□□□ 0.07
USP3-204ENST00000540797 SPATA31A5Q5VU36 1347 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 SPATA31A7Q8IWB4 1347 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 ARHGEF40Q8TER5 1519 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 PLEKHA8P1O95397 391 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 ABCB4P21439 1286 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 ADKP55263 362 aaKnown RBP15.5■□□□□ 0.07
USP3-204ENST00000540797 MTERF2Q49AM1 385 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 ASIC3Q9UHC3 531 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 LRFN2Q9ULH4 789 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 LACTBP83111 547 aaPredicted RBP15.5■□□□□ 0.07
USP3-204ENST00000540797 IFRD2Q12894 506 aaPredicted RBP15.5■□□□□ 0.07
USP3-204ENST00000540797 LINC00116Q8NCU8 138 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 ACCSQ96QU6 501 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 CRAMP1Q96RY5 1269 aa15.5■□□□□ 0.07
USP3-204ENST00000540797 ABCC12Q96J65 1359 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 MXRA7P84157 204 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 GABPAQ06546 454 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 KMT5BQ4FZB7 885 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 PDXDC2PQ6P474 469 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 GABPB2Q8TAK5 448 aaPredicted RBP15.49■□□□□ 0.07
USP3-204ENST00000540797 RAB3IL1Q8TBN0 382 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 GSDMAQ96QA5 445 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 TTLL3Q9Y4R7 772 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 CLCN1P35523 988 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 POLR2FP61218 127 aaKnown RBP15.49■□□□□ 0.07
USP3-204ENST00000540797 CACNB1Q02641 598 aaPredicted RBP15.49■□□□□ 0.07
USP3-204ENST00000540797 NLRP7Q8WX94 980 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 TMEM47Q9BQJ4 181 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 FBXO40Q9UH90 709 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 FEM1BQ9UK73 627 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 AGLP35573 1532 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 EVCP57679 992 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 KRT222Q8N1A0 295 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 PSMB7Q99436 277 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 STK17AQ9UEE5 414 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 USP17L10C9JJH3 530 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 ZBTB16Q05516 673 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 PRR5LQ6MZQ0 368 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 TBC1D10CQ8IV04 446 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 TRIM31Q9BZY9 425 aa15.49■□□□□ 0.07
USP3-204ENST00000540797 IQCA1LA6NCM1 817 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 ZSCAN20P17040 1043 aaPredicted RBP15.48■□□□□ 0.07
USP3-204ENST00000540797 SCYL2Q6P3W7 929 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 SLC44A5Q8NCS7 719 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 MIS12Q9H081 205 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 FANCLQ9NW38 375 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 TSKSQ9UJT2 592 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 ATP2C2O75185 946 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 CLUL1Q15846 466 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 DAAM2Q86T65 1068 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 PCDHA5Q9Y5H7 936 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 DLC1Q96QB1 1528 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 ZBTB24O43167 697 aaPredicted RBP15.48■□□□□ 0.07
USP3-204ENST00000540797 STAM2O75886 525 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 TMTC3Q6ZXV5 915 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 RAVER2Q9HCJ3 691 aaKnown RBP15.48■□□□□ 0.07
USP3-204ENST00000540797 PTPRUQ92729 1446 aa15.48■□□□□ 0.07
USP3-204ENST00000540797 LRRC7Q96NW7 1537 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 NR2F2P24468 414 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 MYL7Q01449 175 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 SPP2Q13103 211 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 PPP2R5DQ14738 602 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 ANKRD36BP1Q96IX9 119 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 NEDD4P46934 1319 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 ZBTB5O15062 677 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 CAMTA2O94983 1202 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 SND1Q7KZF4 910 aaKnown RBP eCLIP15.47■□□□□ 0.07
USP3-204ENST00000540797 CCDC105Q8IYK2 499 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 TBC1D16Q8TBP0 767 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 MAIP1Q8WWC4 291 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 AMFRQ9UKV5 643 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 ODF2LQ9ULJ1 636 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 ZNRF3Q9ULT6 936 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 EXOC3L4Q17RC7 722 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 KLHL7Q8IXQ5 586 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 ADAMTS13Q76LX8 1427 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 AP3B2Q13367 1082 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 LRRC41Q15345 812 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 ARFGAP2Q8N6H7 521 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 EEF2KMTQ96G04 330 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 AIFM3Q96NN9 605 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 SH3GLB2Q9NR46 395 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 KRT81Q14533 505 aa15.47■□□□□ 0.07
USP3-204ENST00000540797 SNRNP48Q6IEG0 339 aaKnown RBP15.47■□□□□ 0.07
USP3-204ENST00000540797 MRRFQ96E11 262 aaKnown RBP15.47■□□□□ 0.07
USP3-204ENST00000540797 POLR2BP30876 1174 aaKnown RBP15.46■□□□□ 0.07
USP3-204ENST00000540797 PSMC2P35998 433 aaKnown RBP15.46■□□□□ 0.07
USP3-204ENST00000540797 RNASELQ05823 741 aaKnown RBP15.46■□□□□ 0.07
USP3-204ENST00000540797 RCSD1Q6JBY9 416 aa15.46■□□□□ 0.07
USP3-204ENST00000540797 CNOT6LQ96LI5 555 aaKnown RBP15.46■□□□□ 0.07
USP3-204ENST00000540797 NT5C1BQ96P26 610 aa15.46■□□□□ 0.07
USP3-204ENST00000540797 CDC25AP30304 524 aa15.46■□□□□ 0.07
USP3-204ENST00000540797 HADHQ16836 314 aaKnown RBP15.46■□□□□ 0.07
USP3-204ENST00000540797 ZNF34Q8IZ26 560 aa15.46■□□□□ 0.07
USP3-204ENST00000540797 ZBTB9Q96C00 473 aa15.46■□□□□ 0.07
USP3-204ENST00000540797 OTUD5Q96G74 571 aa15.46■□□□□ 0.07
USP3-204ENST00000540797 CEP95Q96GE4 821 aa15.46■□□□□ 0.07
USP3-204ENST00000540797 PLA2G12BQ9BX93 195 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms