RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ZNF530Q6P9A1 599 aaPredicted RBP10.41□□□□□ -0.74
CLIP1-214ENST00000540539 VCX3BQ9H321 246 aa10.41□□□□□ -0.74
CLIP1-214ENST00000540539 VCX3AQ9NNX9 186 aa10.41□□□□□ -0.74
CLIP1-214ENST00000540539 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.41□□□□□ -0.74
CLIP1-214ENST00000540539 MBIPQ9NS73 344 aa10.41□□□□□ -0.74
CLIP1-214ENST00000540539 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.41□□□□□ -0.743e-9■■■■□ 19.5
CLIP1-214ENST00000540539 CIDEBQ9UHD4 219 aa10.41□□□□□ -0.74
CLIP1-214ENST00000540539 PKD1L3Q7Z443 1732 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 A0A1W2PQ27 194 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 A0A1W2PQ64 194 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 A0A1W2PQD8 194 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 TMEM247A6NEH6 219 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 HMGB1P1B2RPK0 211 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-214ENST00000540539 GNA14O95837 355 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 SPATA31D3P0C874 917 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 MYL6BP14649 208 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 VARSP26640 1264 aaKnown RBP10.4□□□□□ -0.74
CLIP1-214ENST00000540539 MLH1P40692 756 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 MAP7D1Q3KQU3 841 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 TMEM53Q6P2H8 277 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 SPATA31D4Q6ZUB0 917 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 C3orf67Q6ZVT6 689 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 CXorf38Q8TB03 319 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 RNF25Q96BH1 459 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-214ENST00000540539 ZNF653Q96CK0 615 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 CCDC43Q96MW1 224 aaKnown RBP10.4□□□□□ -0.74
CLIP1-214ENST00000540539 CARD9Q9H257 536 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 VCXQ9H320 206 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 TRIM10Q9UDY6 481 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 ZMYND8Q9ULU4 1186 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-214ENST00000540539 WNK3Q9BYP7 1800 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 PHF20L1A8MW92 1017 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 F8W031 263 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-214ENST00000540539 PSMD14O00487 310 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 BCRP11274 1271 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 SARSP49591 514 aaKnown RBP10.4□□□□□ -0.74
CLIP1-214ENST00000540539 FOSBP53539 338 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 MCL1Q07820 350 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 TOB2Q14106 344 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-214ENST00000540539 LONRF3Q496Y0 759 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 CMPK2Q5EBM0 449 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 CFAP58Q5T655 872 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 RBM26Q5T8P6 1007 aaKnown RBP10.4□□□□□ -0.74
CLIP1-214ENST00000540539 C14orf80Q86SX3 495 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 CAGE1Q8TC20 777 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 AIDAQ96BJ3 306 aa10.4□□□□□ -0.74
CLIP1-214ENST00000540539 PUS3Q9BZE2 481 aaKnown RBP10.4□□□□□ -0.74
CLIP1-214ENST00000540539 TAF1DQ9H5J8 278 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-214ENST00000540539 DISP2A7MBM2 1401 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 DCAF8L1A6NGE4 600 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 GNAT3A8MTJ3 354 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 P4HA2O15460 535 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 GTPBP6O43824 516 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-214ENST00000540539 MRPS25P82663 173 aaKnown RBP10.39□□□□□ -0.75
CLIP1-214ENST00000540539 GSTM4Q03013 218 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 RBL2Q08999 1139 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 FAM133BQ5BKY9 247 aaKnown RBP10.39□□□□□ -0.75
CLIP1-214ENST00000540539 C1orf141Q5JVX7 400 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 PAPD7Q5XG87 772 aaKnown RBP10.39□□□□□ -0.75
CLIP1-214ENST00000540539 ZNF365Q70YC5 407 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 PTF1AQ7RTS3 328 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 WDR66Q8TBY9 1149 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 CPLX3Q8WVH0 158 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 NR1H4Q96RI1 486 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-214ENST00000540539 CENPOQ9BU64 300 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 ABCF2Q9UG63 623 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 CROTQ9UKG9 612 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 CHMP2BQ9UQN3 213 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 TMED5Q9Y3A6 229 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 ZNF185O15231 689 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 IDO1P14902 403 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 GNAZP19086 355 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 DRD4P21917 467 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 TMOD1P28289 359 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 PAK2Q13177 524 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 THOC7Q6I9Y2 204 aaKnown RBP10.39□□□□□ -0.75
CLIP1-214ENST00000540539 CCDC70Q6NSX1 233 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 CD302Q8IX05 232 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 ARFGAP2Q8N6H7 521 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 C1orf131Q8NDD1 294 aaKnown RBP10.39□□□□□ -0.75
CLIP1-214ENST00000540539 USP33Q8TEY7 942 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 UCMAQ8WVF2 138 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 NCSTNQ92542 709 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 RAPGEF5Q92565 580 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 ABHD8Q96I13 439 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 SRPK1Q96SB4 655 aaKnown RBP10.39□□□□□ -0.75
CLIP1-214ENST00000540539 LRRC1Q9BTT6 524 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 TUBE1Q9UJT0 475 aa10.39□□□□□ -0.75
CLIP1-214ENST00000540539 TRPC5Q9UL62 973 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-214ENST00000540539 IFIT3O14879 490 aaKnown RBP10.38□□□□□ -0.75
CLIP1-214ENST00000540539 LDHAP00338 332 aaKnown RBP10.38□□□□□ -0.75
CLIP1-214ENST00000540539 GNAI2P04899 355 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 MMEP08473 750 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 KRT16P08779 473 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 GSTA2P09210 222 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 ZKSCAN1P17029 563 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-214ENST00000540539 SERPINB4P48594 390 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 NECTIN1Q15223 517 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 ZNF394Q53GI3 561 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 AKAP4Q5JQC9 854 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms