RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 H7C1W4 665 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 HNRNPRO43390 633 aaKnown RBP4.13□□□□□ -1.75
MCF2-210ENST00000536274 SETSIPP0DME0 302 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 CASP1P29466 404 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 CASP14P31944 242 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 STAT6P42226 847 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 CLCN2P51788 898 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 RNASE9P60153 205 aaKnown RBP4.13□□□□□ -1.75
MCF2-210ENST00000536274 MAP2K5Q13163 448 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 ZRSR2Q15696 482 aaKnown RBP4.13□□□□□ -1.75
MCF2-210ENST00000536274 RC3H1Q5TC82 1133 aaKnown RBP4.13□□□□□ -1.75
MCF2-210ENST00000536274 CREB3L3Q68CJ9 461 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 WDR93Q6P2C0 686 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 MTHFD1LQ6UB35 978 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 SEPT14Q6ZU15 432 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 FOXP4Q8IVH2 680 aaPredicted RBP4.13□□□□□ -1.75
MCF2-210ENST00000536274 RAVER1Q8IY67 606 aaKnown RBP4.13□□□□□ -1.75
MCF2-210ENST00000536274 IFT81Q8WYA0 676 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 ABTB1Q969K4 478 aaPredicted RBP4.13□□□□□ -1.75
MCF2-210ENST00000536274 CCDC47Q96A33 483 aaKnown RBP4.13□□□□□ -1.75
MCF2-210ENST00000536274 EDC3Q96F86 508 aaKnown RBP4.13□□□□□ -1.75
MCF2-210ENST00000536274 SEC16BQ96JE7 1060 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 TSPAN18Q96SJ8 248 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 CHP1Q99653 195 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 DDX50Q9BQ39 737 aaKnown RBP4.13□□□□□ -1.75
MCF2-210ENST00000536274 PPP1R12CQ9BZL4 782 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 DLGAP2Q9P1A6 1054 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 NKX1-2Q9UD57 310 aaPredicted RBP4.13□□□□□ -1.75
MCF2-210ENST00000536274 MROH7-TTC4A0A0A0MT08 1334 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 FLT4P35916 1363 aa4.13□□□□□ -1.75
MCF2-210ENST00000536274 NBPF26B4DH59 902 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 STX10O60499 249 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 TUBB4AP04350 444 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 FERP16591 822 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 GCLCP48506 637 aaPredicted RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 FXR1P51114 621 aaKnown RBP eCLIP4.12□□□□□ -1.75
MCF2-210ENST00000536274 USP46P62068 366 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 ERVK-24P63145 666 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 TBX2Q13207 712 aaPredicted RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 CHRNA2Q15822 529 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 KBTBD12Q3ZCT8 623 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 ANKRD20A2Q5SQ80 823 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 ANKRD20A1Q5TYW2 823 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 ANKRD20A3Q5VUR7 823 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 DMRTA1Q5VZB9 504 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 KLHL10Q6JEL2 608 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 OLFML1Q6UWY5 402 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 HDGFL2Q7Z4V5 671 aaPredicted RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 GALNT15Q8N3T1 639 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 MRPS27Q92552 414 aaKnown RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 RUFY1Q96T51 708 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 MOV10L1Q9BXT6 1211 aaKnown RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 UBAP1Q9NZ09 502 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.12□□□□□ -1.75
MCF2-210ENST00000536274 WDR35Q9P2L0 1181 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 UNCXA6NJT0 531 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 H0Y3Z8 333 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 LSM1O15116 133 aaKnown RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 NR1D1P20393 614 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 IGHMBP2P38935 993 aaKnown RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 CD151P48509 253 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 SARSP49591 514 aaKnown RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 ERFP50548 548 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 AMPD2Q01433 879 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 PLOD1Q02809 727 aaPredicted RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 TMEM154Q6P9G4 183 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 MICALCLQ6ZW33 695 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 CCNJLQ8IV13 435 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 PI4K2BQ8TCG2 481 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 ARHGAP45Q92619 1136 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 KCNN1Q92952 543 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 KCTD12Q96CX2 325 aaKnown RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 MED15Q96RN5 788 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 OSBPL9Q96SU4 736 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.12□□□□□ -1.75
MCF2-210ENST00000536274 NACA2Q9H009 215 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 TMX4Q9H1E5 349 aaPredicted RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 VIPAS39Q9H9C1 493 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 BATF3Q9NR55 127 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 SH2B1Q9NRF2 756 aaPredicted RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 TMOD4Q9NZQ9 345 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 CNOT8Q9UFF9 292 aaKnown RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 RCOR1Q9UKL0 485 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 CHMP2BQ9UQN3 213 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 AXIN2Q9Y2T1 843 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 CNTNAP4Q9C0A0 1308 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 DUOX1Q9NRD9 1551 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 LAMB1P07942 1786 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 SLC27A2O14975 620 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 SURF6O75683 361 aaKnown RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 SHBGP04278 402 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 PFKFB1P16118 471 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 CCT6AP40227 531 aaKnown RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 MDH1P40925 334 aaKnown RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 PSEN2P49810 448 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 ALDH5A1P51649 535 aaPredicted RBP4.12□□□□□ -1.75
MCF2-210ENST00000536274 MYL5Q02045 173 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 GUCY2DQ02846 1103 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 RIC1Q4ADV7 1423 aa4.12□□□□□ -1.75
MCF2-210ENST00000536274 SMUG1Q53HV7 270 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms