RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 NUDCQ9Y266 331 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 PLEKHG2Q9H7P9 1386 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 H3BS24 57 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 MYO1CO00159 1063 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 ATP8B1O43520 1251 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 TPPPO94811 219 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 CCDC175P0C221 793 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 FAM163BP0C2L3 166 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 VCAM1P19320 739 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 CYP7A1P22680 504 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 CHMLP26374 656 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 SESN3P58005 492 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 DEUP1Q05D60 604 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 GRIK3Q13003 919 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 TNNI3KQ59H18 835 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 TEX35Q5T0J7 233 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 MRM1Q6IN84 353 aaKnown RBP6.36□□□□□ -1.39
CD44-236ENST00000533222 C6orf15Q6UXA7 325 aaPredicted RBP6.36□□□□□ -1.39
CD44-236ENST00000533222 CLEC17AQ6ZS10 378 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 TMC3Q7Z5M5 1100 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 SLC51AQ86UW1 340 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 GBP4Q96PP9 640 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 RETREG1Q9H6L5 497 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 ST7Q9NRC1 585 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 SPATS2LQ9NUQ6 558 aaKnown RBP6.36□□□□□ -1.39
CD44-236ENST00000533222 SPTLC3Q9NUV7 552 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 SWAP70Q9UH65 585 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 USP25Q9UHP3 1055 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 BLOC1S6Q9UL45 172 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 ST14Q9Y5Y6 855 aa6.36□□□□□ -1.39
CD44-236ENST00000533222 BAZ1BQ9UIG0 1483 aaKnown RBP6.35□□□□□ -1.39
CD44-236ENST00000533222 ROCK2O75116 1388 aaKnown RBP6.35□□□□□ -1.39
CD44-236ENST00000533222 SPAG9O60271 1321 aaKnown RBP6.35□□□□□ -1.39
CD44-236ENST00000533222 FAM155AB1AL88 458 aaPredicted RBP6.35□□□□□ -1.39
CD44-236ENST00000533222 PDLIM1O00151 329 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 TIMM44O43615 452 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 ADAMTS4O75173 837 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 SMC2O95347 1197 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 IVLP07476 585 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 NAT1P18440 290 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 CD97P48960 835 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 HNRNPH2P55795 449 aaKnown RBP6.35□□□□□ -1.39
CD44-236ENST00000533222 CHMP4BP1P59074 171 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 ZNF445P59923 1031 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 PPP2R5AQ15172 486 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 GNPTABQ3T906 1256 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 TTC19Q6DKK2 380 aaPredicted RBP6.35□□□□□ -1.39
CD44-236ENST00000533222 VHLLQ6RSH7 139 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 ZNF574Q6ZN55 896 aaPredicted RBP6.35□□□□□ -1.39
CD44-236ENST00000533222 MORC1Q86VD1 984 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 WFDC3Q8IUB2 231 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 PMFBP1Q8TBY8 1022 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 MIPOL1Q8TD10 442 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 NETO1Q8TDF5 533 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 KIF1BPQ96EK5 621 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 DRC1Q96MC2 740 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 FBXL18Q96ME1 805 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 HSPA12BQ96MM6 686 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 FMNL2Q96PY5 1086 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 CHMP5Q9NZZ3 219 aa6.35□□□□□ -1.39
CD44-236ENST00000533222 INSRP06213 1382 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 CREB3O43889 395 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 SH3BP5O60239 455 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 COBLO75128 1261 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 RPS6KA5O75582 802 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 RPL17P18621 184 aaKnown RBP6.34□□□□□ -1.39
CD44-236ENST00000533222 SPINK2P20155 84 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 KIR3DL1P43629 444 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 RPS6KA3P51812 740 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 RNF4P78317 190 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 BNIP3Q12983 259 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 IFI16Q16666 785 aaKnown RBP6.34□□□□□ -1.39
CD44-236ENST00000533222 ZMYM1Q5SVZ6 1142 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 KIAA1211LQ6NV74 962 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 CCDC186Q7Z3E2 898 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 SRLQ86TD4 932 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 TAX1BP1Q86VP1 789 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 CCDC144CPQ8IYA2 1237 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 TEX11Q8IYF3 940 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 GOLGA5Q8TBA6 731 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 PIBF1Q8WXW3 757 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 MIEF2Q96C03 454 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 FAXDC2Q96IV6 333 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 CRACR2AQ9BSW2 395 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 PRDM14Q9GZV8 571 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 PHAXQ9H814 394 aaKnown RBP6.34□□□□□ -1.39
CD44-236ENST00000533222 MKNK2Q9HBH9 465 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 CPSF2Q9P2I0 782 aaKnown RBP6.34□□□□□ -1.39
CD44-236ENST00000533222 DKK3Q9UBP4 350 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 BARX2Q9UMQ3 279 aaPredicted RBP6.34□□□□□ -1.39
CD44-236ENST00000533222 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.34□□□□□ -1.39
CD44-236ENST00000533222 EIF4G1Q04637 1599 aaKnown RBP6.34□□□□□ -1.39
CD44-236ENST00000533222 ZMYM4Q5VZL5 1548 aa6.34□□□□□ -1.39
CD44-236ENST00000533222 KTN1Q86UP2 1357 aaKnown RBP6.33□□□□□ -1.4
CD44-236ENST00000533222 PITPNM2Q9BZ72 1349 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 NPHP1O15259 732 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 SMARCA5O60264 1052 aaPredicted RBP6.33□□□□□ -1.4
CD44-236ENST00000533222 GJB6O95452 261 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 STIP1P31948 543 aaKnown RBP6.33□□□□□ -1.4
CD44-236ENST00000533222 NF2P35240 595 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms