RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 STRIP2Q9ULQ0 834 aa6.18□□□□□ -1.42
CD44-235ENST00000532339 CPS1P31327 1500 aa6.18□□□□□ -1.42
CD44-235ENST00000532339 AURKAO14965 403 aa6.17□□□□□ -1.42
CD44-235ENST00000532339 CYBBP04839 570 aa6.17□□□□□ -1.42
CD44-235ENST00000532339 EPHX1P07099 455 aa6.17□□□□□ -1.42
CD44-235ENST00000532339 L1CAMP32004 1257 aa6.17□□□□□ -1.42
CD44-235ENST00000532339 AFF3P51826 1226 aaKnown RBP6.17□□□□□ -1.42
CD44-235ENST00000532339 CASP7P55210 303 aa6.17□□□□□ -1.42
CD44-235ENST00000532339 PLEKHN1Q494U1 663 aaPredicted RBP6.17□□□□□ -1.42
CD44-235ENST00000532339 BICRALQ6AI39 1079 aa6.17□□□□□ -1.42
CD44-235ENST00000532339 PAQR3Q6TCH7 311 aa6.17□□□□□ -1.42
CD44-235ENST00000532339 NLGN2Q8NFZ4 835 aa6.17□□□□□ -1.42
CD44-235ENST00000532339 PANK1Q8TE04 598 aa6.17□□□□□ -1.42
CD44-235ENST00000532339 KLHL6Q8WZ60 621 aa6.17□□□□□ -1.42
CD44-235ENST00000532339 ZCCHC4Q9H5U6 513 aa6.17□□□□□ -1.42
CD44-235ENST00000532339 CCSER2Q9H7U1 834 aa6.17□□□□□ -1.42
CD44-235ENST00000532339 INPP5FQ9Y2H2 1132 aa6.17□□□□□ -1.42
CD44-235ENST00000532339 UNCXA6NJT0 531 aa6.16□□□□□ -1.42
CD44-235ENST00000532339 DBHP09172 617 aa6.16□□□□□ -1.42
CD44-235ENST00000532339 BMP7P18075 431 aa6.16□□□□□ -1.42
CD44-235ENST00000532339 GRB10Q13322 594 aa6.16□□□□□ -1.42
CD44-235ENST00000532339 CNKSR3Q6P9H4 555 aa6.16□□□□□ -1.42
CD44-235ENST00000532339 IGDCC3Q8IVU1 814 aa6.16□□□□□ -1.42
CD44-235ENST00000532339 TMEFF1Q8IYR6 380 aa6.16□□□□□ -1.42
CD44-235ENST00000532339 DACT3Q96B18 629 aaPredicted RBP6.16□□□□□ -1.42
CD44-235ENST00000532339 RCC1LQ96I51 464 aaKnown RBP6.16□□□□□ -1.42
CD44-235ENST00000532339 FGD4Q96M96 766 aa6.16□□□□□ -1.42
CD44-235ENST00000532339 PARD6AQ9NPB6 346 aa6.16□□□□□ -1.42
CD44-235ENST00000532339 CGGBP1Q9UFW8 167 aaPredicted RBP6.16□□□□□ -1.42
CD44-235ENST00000532339 PCDHA5Q9Y5H7 936 aa6.16□□□□□ -1.42
CD44-235ENST00000532339 CAMSAP1Q5T5Y3 1602 aa6.16□□□□□ -1.42
CD44-235ENST00000532339 ALKQ9UM73 1620 aa6.16□□□□□ -1.42
CD44-235ENST00000532339 STXBP3O00186 592 aa6.15□□□□□ -1.42
CD44-235ENST00000532339 BUB1BO60566 1050 aaPredicted RBP6.15□□□□□ -1.42
CD44-235ENST00000532339 VAMP4O75379 141 aa6.15□□□□□ -1.42
CD44-235ENST00000532339 PFKLP17858 780 aa6.15□□□□□ -1.42
CD44-235ENST00000532339 SEPHS1P49903 392 aa6.15□□□□□ -1.42
CD44-235ENST00000532339 RBM10P98175 930 aaKnown RBP6.15□□□□□ -1.42
CD44-235ENST00000532339 AMPD2Q01433 879 aa6.15□□□□□ -1.42
CD44-235ENST00000532339 VHLLQ6RSH7 139 aa6.15□□□□□ -1.42
CD44-235ENST00000532339 ARHGEF39Q8N4T4 335 aa6.15□□□□□ -1.42
CD44-235ENST00000532339 MCMBPQ9BTE3 642 aa6.15□□□□□ -1.42
CD44-235ENST00000532339 ACBD3Q9H3P7 528 aa6.15□□□□□ -1.42
CD44-235ENST00000532339 EPB41L4AQ9HCS5 686 aaPredicted RBP6.15□□□□□ -1.42
CD44-235ENST00000532339 SUGT1Q9Y2Z0 365 aa6.15□□□□□ -1.42
CD44-235ENST00000532339 BACE2Q9Y5Z0 518 aa6.15□□□□□ -1.42
CD44-235ENST00000532339 TRAPPC8Q9Y2L5 1435 aa6.15□□□□□ -1.43
CD44-235ENST00000532339 SETBP1Q9Y6X0 1596 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 SIGLEC1Q9BZZ2 1709 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 TRBV23OR9-2A0A075B6M9 112 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 ANKRD34BA5PLL1 514 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 C2orf71A6NGG8 1288 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 HOXA5P20719 270 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 TACR1P25103 407 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 RBM25P49756 843 aaKnown RBP6.14□□□□□ -1.43
CD44-235ENST00000532339 NCKAP1LP55160 1127 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 CTSWP56202 376 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 ZNF200P98182 395 aaPredicted RBP6.14□□□□□ -1.43
CD44-235ENST00000532339 TARBP2Q15633 366 aaKnown RBP6.14□□□□□ -1.43
CD44-235ENST00000532339 DPY19L1Q2PZI1 675 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 KIAA1211LQ6NV74 962 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 FAM129CQ86XR2 697 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 MARCH10Q8NA82 808 aaPredicted RBP6.14□□□□□ -1.43
CD44-235ENST00000532339 KCNC2Q96PR1 638 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 SUSD2Q9UGT4 822 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 IRS2Q9Y4H2 1338 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 FHOD3Q2V2M9 1422 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 DENND4BO75064 1496 aaPredicted RBP6.14□□□□□ -1.43
CD44-235ENST00000532339 EFCAB5A4FU69 1503 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 ZFYVE16Q7Z3T8 1539 aa6.14□□□□□ -1.43
CD44-235ENST00000532339 NAT2P11245 290 aa6.13□□□□□ -1.43
CD44-235ENST00000532339 CABP7Q86V35 215 aa6.13□□□□□ -1.43
CD44-235ENST00000532339 CRACR2BQ8N4Y2 399 aaPredicted RBP6.13□□□□□ -1.43
CD44-235ENST00000532339 FAM169BQ8N8A8 192 aa6.13□□□□□ -1.43
CD44-235ENST00000532339 DBR1Q9UK59 544 aaKnown RBP6.13□□□□□ -1.43
CD44-235ENST00000532339 PLA2R1Q13018 1463 aa6.13□□□□□ -1.43
CD44-235ENST00000532339 MAGI2Q86UL8 1455 aa6.13□□□□□ -1.43
CD44-235ENST00000532339 KRTAP9-7A8MTY7 169 aa6.12□□□□□ -1.43
CD44-235ENST00000532339 F8W031 263 aaPredicted RBP6.12□□□□□ -1.43
CD44-235ENST00000532339 TRIM13O60858 407 aa6.12□□□□□ -1.43
CD44-235ENST00000532339 SASH1O94885 1247 aa6.12□□□□□ -1.43
CD44-235ENST00000532339 PAMP19021 973 aa6.12□□□□□ -1.43
CD44-235ENST00000532339 ZNF143P52747 638 aaPredicted RBP6.12□□□□□ -1.43
CD44-235ENST00000532339 NCAPHQ15003 741 aa6.12□□□□□ -1.43
CD44-235ENST00000532339 ZMYM4Q5VZL5 1548 aa6.12□□□□□ -1.43
CD44-235ENST00000532339 POMZP3Q6PJE2 187 aa6.12□□□□□ -1.43
CD44-235ENST00000532339 NLGN1Q8N2Q7 840 aa6.12□□□□□ -1.43
CD44-235ENST00000532339 ANAPC16Q96DE5 110 aa6.12□□□□□ -1.43
CD44-235ENST00000532339 PWWP2AQ96N64 755 aa6.12□□□□□ -1.43
CD44-235ENST00000532339 APBA2Q99767 749 aa6.12□□□□□ -1.43
CD44-235ENST00000532339 AKT3Q9Y243 479 aa6.12□□□□□ -1.43
CD44-235ENST00000532339 TCOF1Q13428 1488 aaKnown RBP6.11□□□□□ -1.43
CD44-235ENST00000532339 SHANK2Q9UPX8 1470 aa6.11□□□□□ -1.43
CD44-235ENST00000532339 NPHP3-ACAD11A0A0J9YXS1 232 aa6.11□□□□□ -1.43
CD44-235ENST00000532339 GLI4P10075 376 aa6.11□□□□□ -1.43
CD44-235ENST00000532339 ATF4P18848 351 aaPredicted RBP6.11□□□□□ -1.43
CD44-235ENST00000532339 IGFBP6P24592 240 aaPredicted RBP6.11□□□□□ -1.43
CD44-235ENST00000532339 YY1P25490 414 aa6.11□□□□□ -1.43
CD44-235ENST00000532339 PRR5P85299 388 aa6.11□□□□□ -1.43
CD44-235ENST00000532339 VPS37DQ86XT2 251 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms