RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 PGAP2Q9UHJ9 254 aa16.57■□□□□ 0.24
ECHDC1-220ENST00000528402 FEM1BQ9UK73 627 aa16.57■□□□□ 0.24
ECHDC1-220ENST00000528402 PNMA2Q9UL42 364 aa16.57■□□□□ 0.24
ECHDC1-220ENST00000528402 CTNND2Q9UQB3 1225 aa16.57■□□□□ 0.24
ECHDC1-220ENST00000528402 PAXBP1Q9Y5B6 917 aa16.57■□□□□ 0.24
ECHDC1-220ENST00000528402 ZBTB7AO95365 584 aa16.56■□□□□ 0.24
ECHDC1-220ENST00000528402 PRCPP42785 496 aa16.56■□□□□ 0.24
ECHDC1-220ENST00000528402 JAG1P78504 1218 aa16.56■□□□□ 0.24
ECHDC1-220ENST00000528402 GRB10Q13322 594 aa16.56■□□□□ 0.24
ECHDC1-220ENST00000528402 TMEM119Q4V9L6 283 aa16.56■□□□□ 0.24
ECHDC1-220ENST00000528402 CRYGNQ8WXF5 182 aa16.56■□□□□ 0.24
ECHDC1-220ENST00000528402 LARP4BQ92615 738 aaKnown RBP16.56■□□□□ 0.24
ECHDC1-220ENST00000528402 HAS1Q92839 578 aa16.56■□□□□ 0.24
ECHDC1-220ENST00000528402 HOOK2Q96ED9 719 aa16.56■□□□□ 0.24
ECHDC1-220ENST00000528402 FAM20AQ96MK3 541 aa16.56■□□□□ 0.24
ECHDC1-220ENST00000528402 THAP9Q9H5L6 903 aa16.56■□□□□ 0.24
ECHDC1-220ENST00000528402 ADD3Q9UEY8 706 aaKnown RBP16.56■□□□□ 0.24
ECHDC1-220ENST00000528402 ITIH6Q6UXX5 1313 aa16.56■□□□□ 0.24
ECHDC1-220ENST00000528402 USP17L15C9J2P7 530 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 USP17L13C9JLJ4 530 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 USP17L11C9JVI0 530 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 USP17L18D6R9N7 530 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 USP17L22D6RA61 530 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 USP17L17D6RBQ6 530 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 USP17L19D6RCP7 530 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 USP17L20D6RJB6 530 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 EEF1GP26641 437 aaKnown RBP16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 SREBF1P36956 1147 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 STX17P56962 302 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 ASIC1P78348 528 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 ARHGAP4P98171 946 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 USP17L24Q0WX57 530 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 SHROOM1Q2M3G4 852 aaPredicted RBP16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 FOXR2Q6PJQ5 311 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 USP17L6PQ6QN14 398 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 UNC13DQ70J99 1090 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 FAM114A1Q8IWE2 563 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 CCAR2Q8N163 923 aaKnown RBP16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 C17orf53Q8N3J3 647 aaPredicted RBP16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 SAMD3Q8N6K7 520 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 ERMNQ8TAM6 284 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 SNX29Q8TEQ0 813 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 RAD54LQ92698 747 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 TMEM39BQ9GZU3 492 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 RANBP17Q9H2T7 1088 aaKnown RBP16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 KCNMB3Q9NPA1 279 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 BMP2KQ9NSY1 1161 aaPredicted RBP16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 MRPL11Q9Y3B7 192 aaKnown RBP16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 RABGAP1Q9Y3P9 1069 aa16.55■□□□□ 0.24
ECHDC1-220ENST00000528402 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.55■□□□□ 0.241e-7■■■■□ 23.8
ECHDC1-220ENST00000528402 STX10O60499 249 aa16.54■□□□□ 0.24
ECHDC1-220ENST00000528402 TPM1P09493 284 aa16.54■□□□□ 0.24
ECHDC1-220ENST00000528402 PDE4DQ08499 809 aa16.54■□□□□ 0.24
ECHDC1-220ENST00000528402 TRIM14Q14142 442 aa16.54■□□□□ 0.24
ECHDC1-220ENST00000528402 ARID5BQ14865 1188 aa16.54■□□□□ 0.24
ECHDC1-220ENST00000528402 HAUS3Q68CZ6 603 aa16.54■□□□□ 0.24
ECHDC1-220ENST00000528402 APTXQ7Z2E3 356 aaKnown RBP16.54■□□□□ 0.24
ECHDC1-220ENST00000528402 CCDC51Q96ER9 411 aa16.54■□□□□ 0.24
ECHDC1-220ENST00000528402 PNMA5Q96PV4 448 aa16.54■□□□□ 0.24
ECHDC1-220ENST00000528402 NUP88Q99567 741 aaPredicted RBP16.54■□□□□ 0.24
ECHDC1-220ENST00000528402 NAA15Q9BXJ9 866 aaKnown RBP16.54■□□□□ 0.24
ECHDC1-220ENST00000528402 INTS13Q9NVM9 706 aa16.54■□□□□ 0.24
ECHDC1-220ENST00000528402 ABCB11O95342 1321 aa16.54■□□□□ 0.24
ECHDC1-220ENST00000528402 ARHGAP6O43182 974 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 FGFR1OPO95684 399 aaKnown RBP16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 CCNE1P24864 410 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 ECE1P42892 770 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 PTPN14Q15678 1187 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 TCP11X2Q5H9J9 407 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 PPFIBP1Q86W92 1011 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 SMYD4Q8IYR2 804 aaPredicted RBP16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 ACER1Q8TDN7 264 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 LPAR1Q92633 364 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 PLIN2Q99541 437 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 DEFB129Q9H1M3 183 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 BLOC1S4Q9NUP1 217 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 MAGEC2Q9UBF1 373 aaPredicted RBP16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 GDAQ9Y2T3 454 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 NFKBIEO00221 500 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 CTNND1O60716 968 aaKnown RBP16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 TNNT1P13805 278 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 PBX1P40424 430 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 NBPF9Q3BBW0 867 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 FAM83BQ5T0W9 1011 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 MYRIPQ8NFW9 859 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 PANX2Q96RD6 677 aa16.53■□□□□ 0.24
ECHDC1-220ENST00000528402 GOLGA6L9A6NEM1 432 aa16.52■□□□□ 0.23
ECHDC1-220ENST00000528402 KCNJ18B7U540 433 aa16.52■□□□□ 0.23
ECHDC1-220ENST00000528402 AKR1B15C9JRZ8 316 aaPredicted RBP16.52■□□□□ 0.23
ECHDC1-220ENST00000528402 GCOM1H8Y6P7 765 aaPredicted RBP16.52■□□□□ 0.23
ECHDC1-220ENST00000528402 FZD9O00144 591 aa16.52■□□□□ 0.23
ECHDC1-220ENST00000528402 N4BP3O15049 544 aa16.52■□□□□ 0.23
ECHDC1-220ENST00000528402 ZSCAN12O43309 604 aa16.52■□□□□ 0.23
ECHDC1-220ENST00000528402 POLR2MP0CAP2 368 aa16.52■□□□□ 0.23
ECHDC1-220ENST00000528402 CCT6AP40227 531 aaKnown RBP16.52■□□□□ 0.23
ECHDC1-220ENST00000528402 KCNJ12Q14500 433 aa16.52■□□□□ 0.23
ECHDC1-220ENST00000528402 RASA3Q14644 834 aa16.52■□□□□ 0.23
ECHDC1-220ENST00000528402 USH1GQ495M9 461 aa16.52■□□□□ 0.23
ECHDC1-220ENST00000528402 P2RX5Q93086 422 aa16.52■□□□□ 0.23
ECHDC1-220ENST00000528402 MAP3K20Q9NYL2 800 aaKnown RBP16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms