RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 CREB3L3Q68CJ9 461 aa12.14□□□□□ -0.47
PRPF40B-204ENST00000527253 DEFB123Q8N688 67 aa12.14□□□□□ -0.47
PRPF40B-204ENST00000527253 OR6J1Q8NGC5 347 aa12.14□□□□□ -0.47
PRPF40B-204ENST00000527253 NSUN6Q8TEA1 469 aaKnown RBP12.14□□□□□ -0.47
PRPF40B-204ENST00000527253 SCFD2Q8WU76 684 aa12.14□□□□□ -0.47
PRPF40B-204ENST00000527253 PPP1R13LQ8WUF5 828 aa12.14□□□□□ -0.47
PRPF40B-204ENST00000527253 RMDN3Q96TC7 470 aa12.14□□□□□ -0.47
PRPF40B-204ENST00000527253 MYL10Q9BUA6 226 aa12.14□□□□□ -0.47
PRPF40B-204ENST00000527253 TRPV6Q9H1D0 765 aa12.14□□□□□ -0.47
PRPF40B-204ENST00000527253 MTMR10Q9NXD2 777 aa12.14□□□□□ -0.47
PRPF40B-204ENST00000527253 PCDHA1Q9Y5I3 950 aa12.14□□□□□ -0.47
PRPF40B-204ENST00000527253 UMODL1Q5DID0 1318 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 MROH7Q68CQ1 1323 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 ERICH2A1L162 156 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 A6NJR5 290 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 SH2B2O14492 632 aaPredicted RBP12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 PRC1O43663 620 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 CFBP00751 764 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 MYL3P08590 195 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 EIF2AK2P19525 551 aaKnown RBP12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 HOXA13P31271 388 aaPredicted RBP12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 PPP2R5BQ15173 497 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 LY6KQ17RY6 165 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 MFSD5Q6N075 450 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 SEPT14Q6ZU15 432 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 HOMER1Q86YM7 354 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 PPP1R12CQ9BZL4 782 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 PXMP2Q9NR77 195 aa12.13□□□□□ -0.47
PRPF40B-204ENST00000527253 PNMA6FA0A0J9YX94 578 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 NKRFO15226 690 aaKnown RBP eCLIP12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 B4GALT4O60513 344 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 RGS20O76081 388 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 NR3C2P08235 984 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 CSF2RAP15509 400 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 CYP2C18P33260 490 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 SART3Q15020 963 aaKnown RBP12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 ARHGEF16Q5VV41 709 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 CATIPQ7Z7H3 387 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 ZNF654Q8IZM8 581 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 IL31RAQ8NI17 732 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 PIBF1Q8WXW3 757 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 VWCEQ96DN2 955 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 ZFP91Q96JP5 570 aaPredicted RBP12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 IWS1Q96ST2 819 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 MPHOSPH6Q99547 160 aaKnown RBP12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 LRRC2Q9BYS8 371 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 ANO2Q9NQ90 1003 aa12.12□□□□□ -0.47
PRPF40B-204ENST00000527253 SCN10AQ9Y5Y9 1956 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 B4DLN1 442 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 TLR3O15455 904 aaKnown RBP12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 PLEKHA8P1O95397 391 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 ACRP10323 421 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 MCM5P33992 734 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 CPT1AP50416 773 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 MRPL12P52815 198 aaKnown RBP12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 ARHGAP1Q07960 439 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 TTLL4Q14679 1199 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 STXBP2Q15833 593 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 NBPF20Q3BBV1 942 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 TMEM240Q5SV17 173 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 FAM109BQ6ICB4 259 aaPredicted RBP12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 VSIG10LQ86VR7 867 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 RAB11FIP4Q86YS3 637 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 RASEFQ8IZ41 740 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 SRBD1Q8N5C6 995 aaKnown RBP12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 AFG1LQ8WV93 481 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 RNPC3Q96LT9 517 aaKnown RBP12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 GUCD1Q96NT3 240 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 PDCD2LQ9BRP1 358 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 MTA3Q9BTC8 594 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 NOC4LQ9BVI4 516 aaKnown RBP12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 ALDH8A1Q9H2A2 487 aaPredicted RBP12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 TRMT13Q9NUP7 481 aaKnown RBP12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 POLR3EQ9NVU0 708 aa12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 DDX41Q9UJV9 622 aaKnown RBP12.11□□□□□ -0.47
PRPF40B-204ENST00000527253 EIF3JO75822 258 aaKnown RBP12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 DDAH1O94760 285 aa12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 RXRAP19793 462 aa12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 PGM5Q15124 567 aa12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 RASIP1Q5U651 963 aa12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 CASC1Q6TDU7 716 aa12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 CMTR1Q8N1G2 835 aaKnown RBP12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 GPKOWQ92917 476 aaPredicted RBP eCLIP12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 TMEM87BQ96K49 555 aa12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 FAM161BQ96MY7 647 aa12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 MAP3K14Q99558 947 aa12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 MTG1Q9BT17 334 aaPredicted RBP12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 SEZ6LQ9BYH1 1024 aa12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 WNT8AQ9H1J5 351 aa12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 HIPK3Q9H422 1215 aa12.1□□□□□ -0.47
PRPF40B-204ENST00000527253 KIAA1217Q5T5P2 1943 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 GCOM1H8Y6P7 765 aaPredicted RBP12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 RBAK-RBAKDNI3L0D1 243 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 GH1P01241 217 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 MMP3P08254 477 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 POLR2MP0CAP2 368 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 CYP2C9P11712 490 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 MYCLP12524 364 aaPredicted RBP12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 LIFRP42702 1097 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms